TCONS_00008734-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008734-protein
Unique NameTCONS_00008734-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length749

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008734-protein ID=TCONS_00008734-protein|Name=TCONS_00008734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=749bp
MGEALNIMEVSCPSIFSNNSSTVEISDEEAKLSCIFNEEVHHIPTPPTGA
GEGIQANDIGSLLEQFLEYEQGSEGDASSRQDSYFITPVGSPGGPNDDVV
LGRLMIVQEKLTQEVENNASPSPPPDEDEIIDVTEDNNNVSTIKLKVDGL
FRTVNGIHPKGNNIRMADSPKFAKFKKKKQTIEIPRRCQSGPTTPKCTSP
PVSINQEEMKKREAQLIEALALTASKGDLKMNPEHIDADKAKRNLNDPAN
NNKRKISEPISSRMMPVISKRQRKAELEKQEQINRAEGKSTDPRLIKMGY
CETSNTTYLMNTNLVQVNTAVVTEDDDTTVDHIGIVDMTIDHEALAGTII
TPSKSDVGADETFTEEVYSSSTETDLSKRPSPSPDDKNSMIQQLEKLENM
PQQMIKLDEIKQEPVDFETTNESIPPEVSTNTNTVINSVPNTSLTLEQEE
EQLLENTKNDIIFKSKAPRSIQLVKPHSIKPPKNYRQNIDPQSSGSDSES
DDLDYDIKRRKRKIESNKKIHPSRSRSRAQSRARTRSRSPIDRSRANSPT
IPRSQLYDSVRSKEDGFKSKHNSDEENIDISNKLSELSNPVPYDIEHERK
VQFLVGKSVDGYTERKNIYVGGINKQTTKQDLIKRFRRFGKIEKTTLHFR
AKGDNYAFIVYEHPGCAMRAIEEGNDDPSYPRLELCFGGRRKFVGGSYVD
FDGNNSYLEETEQNSRNLRCDSPENDFDSLLKMATQKMRRKREETPEWD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004900XLOC_004900Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008734TCONS_00008734Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 617..684
e-value: 1.3E-7
score: 41.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 618..673
e-value: 2.0E-7
score: 30.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 616..713
score: 11.247
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 610..675
NoneNo IPR availableGENE3D3.30.70.330coord: 483..743
e-value: 2.2E-13
score: 49.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..290
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 472..576
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..388
NoneNo IPR availableCDDcd12357RRM_PPARGC1A_likecoord: 614..702
e-value: 4.18263E-40
score: 141.689

Blast
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BLAST of TCONS_00008734-protein vs. Swiss-Prot (Human)
Match: PPRC1 (Peroxisome proliferator-activated receptor gamma coactivator-related protein 1 OS=Homo sapiens GN=PPRC1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.219e-22
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 0 
Query:  614 ERKNIYVGGINKQTTKQDLIKRFRRFGKIEKTTLHFRAKGDNYAFIVYEHPGCAMRAIEEGN-----DDPSYPRLELCFGGRRKFVGGSYVDFDGNNSYLEETEQNSRNLRCDSPENDFDSLLKMATQKMRR 740
            ER+ +++G I  + T+ +L +RF  FG+IE+ T+HFR +GDNY F+ Y +   A  AIE G+     D+  +   +LCFGGRR+F   SY D D N    +     S   + DS   DFD+LLK A + +RR
Sbjct: 1541 ERRVVFIGKIPGRMTRSELKQRFSVFGEIEECTIHFRVQGDNYGFVTYRYAEEAFAAIESGHKLRQADEQPF---DLCFGGRRQFCKRSYSDLDSNREDFDPAPVKS---KFDS--LDFDTLLKQAQKNLRR 1664
The following BLAST results are available for this feature:
BLAST of TCONS_00008734-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPRC14.219e-2240.15Peroxisome proliferator-activated receptor gamma c... [more]
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