TCONS_00008715-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008715-protein
Unique NameTCONS_00008715-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1784

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008715-protein ID=TCONS_00008715-protein|Name=TCONS_00008715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1784bp
MPEDEADFPRGGAPTLTPLEVRKIRADAEKDVLFTKNVGPTPKKKKKKSS
TTTDLDAISDVVKPKKKTVENFSFKYLIKEMLLLGYIKEISAKEIIVGLP
NGLNGYIKTSDVRLKLEKLAFDDESDNDEEEDEGEGKYASFEETFKTGQV
VPLIVKDLFPNLTGYKKIEMSLLPSDVNKNVNKNNIKAGMVVWGIVSCVE
DHGYTISVGDNLNCFLPKKQVENSKSLKIGSTKWYVITKYNSKISTVTDD
LEKVKKALVSKEDIKFSNILPGQLFKCNLTEEADECIFGKISSFEIVADK
MHLAEKDPDMETIVGSKNVLGRIIHVNPKTKQVGVSFLPELTSFQGNVVD
GSFKVGDVVQDCEVQEKSKTHGLVMKMPNGKYGAVHITRLADDEEKIGKK
HAAGTKHSCRVLAYSAMDSNYTLSMKKSDMEKKFFSYNDITSGMVVKCTV
ISFETYGAILKISNHIRGLCPTLHLADIPLKKPSKKFVIDKKVTCRVLKV
QPEKKKITLTHKKTMVGSEQPIVDSYATAKVGSSVVGFVINVQSYGVVLG
FYNDVRALMLKSEIIFPEGSRLEDVFYVGKVVQCVIISVNAEQKKMNVSM
KKSGLKKADLAFGNKVEHVSFLSAMPSEIKLKVDDKSEVVLPKDHLSDFQ
SVSNDLMELIKSTENASLLNGAVVYGQDKKEKKTLVSCKKMLQSGEERLS
FEDLKVDSVHGGTVVHIMDFGVFVDIAPGLRGLAPASHLTDRFTKDATQY
FSVGQSVIAKVKDIDNEKKRFVITLKPSEVSAASQDNELYSQYSNIALLE
NVLSERNSIFEQINKGNDEELKLLLSLDKEVIIAKVDSITKEGVTLQYTV
NDVTVNGFIPKAAKHGADFEQGETCQCFVPFIEIAQRRFIGYCQPEAIKD
QIKKSKKKSKLTKEMNIESVVCYANEDLCVVLLPEHRHQIAYMPARMHLN
EVNVTVMEINHKVKAQYERTSDYGILVSNLDQAESTEEPTNIKVGSIVNA
VIKGIKPNQLSVTMCNGHLRGRVHISNVFDDFNEGDQILKDYTPSQIIKT
KVVAFKDVKTHNYLAVTSTHKTIHYAELTLKKSDMEKSSDEFTDGKQSQL
TDFEKGKEVNCFVTGLNKYDIQVCVDPFIRGKIPILMSSKDSKDYDKLKS
KYPNGTALKASITDVDEKHKLLVLSRIGQPSDLLKKHSNVVGRITKSLKN
GLLIELPNQKAGLAHVTELSDTFVDNPLDQHKLNTYVECQIIHVDTKNNH
IDLSLRQSRILGQESVTEGIDKVVNGYDDLKEGDIIRGYVKACTKVGVFV
SLSSNISGRVQIKNLSQFFVKDYQSLFPVGKLVKAKILSINPTNNNIDLS
LRGKDVNDRDPAPPPPKRKSTDDTDEGTKVTGDREENEEEGASQAKKRKI
MDTSLDDGDADLKEQDESDQDEEMSEADEDKESSEDEEDTEKETKPSLDI
SGGFDWSADVKMNTQSDSEESENNEEDDKKSAKQTKRQKRAAKKAEEESL
HKAELALLDTERQLESAEDFDRLVLGSPNSSIVWIQYMAFHLHAAEVDKA
IAVGRKALKTISFREEQEKLNIWVALLNLENSYGTKASLETLFQEAVKAN
EPKKVYVKMVELYVKNDKNEEAEKLYQVMLKRFKQSKKVWVGYAYFLMKI
GKHEEARALLQRSLKSLQQRKHVATILKFAIMEFKLGEAQRGGTIFESLL
KNYPRKTDIWSIYIDMWIREQDFEQVRNIFERVITLSLSTKKMKFLFKRY
VAFEEQHGDKTSVEKVRQKAAEYIDRHLFDDAEE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004896XLOC_004896Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008715TCONS_00008715Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR022967S1_dom
IPR003029S1_domain
IPR008847Suf
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0006397mRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
biological_process GO:0006396 RNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1493..1513
NoneNo IPR availableCOILSCoilCoilcoord: 1650..1670
NoneNo IPR availableGENE3D2.40.50.140coord: 1187..1268
e-value: 7.6E-15
score: 54.4
NoneNo IPR availableGENE3D2.40.50.140coord: 76..176
e-value: 1.5E-6
score: 27.8
NoneNo IPR availableGENE3D2.40.50.140coord: 177..337
e-value: 3.5E-7
score: 29.6
NoneNo IPR availableGENE3D2.40.50.140coord: 432..516
e-value: 1.5E-18
score: 66.1
coord: 696..782
e-value: 9.1E-22
score: 76.5
coord: 524..606
e-value: 1.3E-12
score: 47.1
NoneNo IPR availableGENE3D2.40.50.140coord: 976..1084
e-value: 6.4E-10
score: 38.5
coord: 345..431
e-value: 1.5E-9
score: 37.3
coord: 1269..1357
e-value: 9.5E-19
score: 66.8
coord: 1085..1183
e-value: 4.4E-8
score: 32.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1344..1499
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 1617..1649
e-value: 0.032
score: 23.4
coord: 1651..1685
e-value: 36.0
score: 11.4
coord: 1687..1719
e-value: 0.054
score: 22.6
coord: 1721..1756
e-value: 0.061
score: 22.5
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 705..776
e-value: 1.1E-18
score: 78.1
coord: 993..1081
e-value: 4.5E-6
score: 36.2
coord: 187..262
e-value: 0.1
score: 21.7
coord: 1185..1256
e-value: 1.4E-14
score: 64.5
coord: 530..601
e-value: 4.5E-12
score: 56.1
coord: 441..512
e-value: 2.7E-17
score: 73.5
coord: 78..173
e-value: 1.2
score: 17.7
coord: 1104..1177
e-value: 0.0033
score: 26.6
coord: 354..426
e-value: 1.1E-4
score: 31.5
coord: 1281..1352
e-value: 2.3E-17
score: 73.7
IPR003029S1 domainPFAMPF00575S1coord: 442..512
e-value: 3.1E-5
score: 24.1
coord: 705..775
e-value: 2.4E-11
score: 43.7
coord: 1280..1352
e-value: 8.2E-9
score: 35.6
IPR003029S1 domainPROSITEPS50126S1coord: 995..1069
score: 9.042
IPR003029S1 domainPROSITEPS50126S1coord: 189..252
score: 8.974
IPR003029S1 domainPROSITEPS50126S1coord: 1106..1177
score: 9.087
IPR003029S1 domainPROSITEPS50126S1coord: 346..426
score: 11.314
IPR003029S1 domainPROSITEPS50126S1coord: 707..776
score: 19.504
IPR003029S1 domainPROSITEPS50126S1coord: 1187..1256
score: 15.026
IPR003029S1 domainPROSITEPS50126S1coord: 532..601
score: 14.059
IPR003029S1 domainPROSITEPS50126S1coord: 443..512
score: 15.364
IPR003029S1 domainPROSITEPS50126S1coord: 1283..1352
score: 18.964
IPR008847Suppressor of forkedPFAMPF05843Sufcoord: 1679..1775
e-value: 2.7E-12
score: 47.2
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 1455..1574
e-value: 0.0041
score: 16.3
coord: 1670..1776
e-value: 8.2E-12
score: 44.6
coord: 1575..1669
e-value: 2.6E-15
score: 56.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 1558..1777
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1603..1740
score: 13.707
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 430..519
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 524..610
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1184..1258
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1271..1358
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 690..783
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 991..1068
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1093..1176
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 168..242

Blast
BLAST of TCONS_00008715-protein vs. Swiss-Prot (Human)
Match: RRP5 (Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3)

HSP 1 Score: 805.053 bits (2078), Expect = 0.000e+0
Identity = 580/1917 (30.26%), Postives = 964/1917 (50.29%), Query Frame = 0
Query:    1 MPEDEADFPRGGAPTLTPLEVRKIRADAEKDVLF--TKNVGPTPKKKKKKSSTTTDLDAIS--DVVKPKKKTVENFSFKYLIKEMLLLGYIKEISAKEIIVGLPNGLNGYIKTSDVRLKLEKLAFDDESDNDEEEDEGEGKYASFEETFKTGQVVPLIVKDLFPNLTGYKKIEMSLLPSDVNKNVNKNNIKAGMVVWGIVSCVEDHGYTISVG-DNLNCFLPK-------KQVENSKSLKIGSTKWYVITKY--NSKISTVTDDLEKVKKALVS-KEDIKFSNILPGQLFKCNLTEEADECIFGK----ISSFEIVADKMHLAEKDPDMETIVGSKNVLGRIIHVNPKTKQVGVSFLPELTSFQGNVVDGSFK-VGDVVQDCEVQEKSKTHGLVMKMPNGKYGAVHITRLADDEEKIGKK-HAAGTKHSCRVLAYSAMDSNYTLSMKKSDMEKKFFSYNDITSGMVVKCTVISFETYGAILKISNHIRGLCPTLHLADIPLKKPSKKFVIDKKVTCRVLKVQPEKKKITLTHKKTMVGSEQPIVDSYATAKVGSSVVGFVINVQSYGVVLGFYNDVRALMLKSEIIFPEGSRLEDVFYVGKVVQCVIISVNAEQKKMNVSMKKSG---LKKADLAFGNKV-EHVSFLSAMPSEIKLKVDDKSEVV---------LPKDHLSDFQSVSNDLMELIKSTENASLLNGAVVYGQDKKEKKTLVSCKK-----MLQSGEERLSFEDLKVDSVHGGTVVHIMDFGVFVDIAPGLRGLAPASHLTDRFTKDATQYFSVGQSVIAKVKDIDNEKKRFVITLKPSEVSAASQDNELYSQYSNIALLENVLSERNSIFEQINKGNDEELKLLLSLDKEVIIAKVDSITKEGVTLQYTVNDVTVNG-----------FIPKAAKH---GADFEQGETCQCFVPFIEIAQRRFIGYCQPEAIKDQIKKSKKKSKLTKEMNIESVVCYANEDLCVVLLPEHRHQIAYMPARMHLNEV---NVTVMEINHKVKAQYERTSDYGI----LVSNLDQAESTEEPT-------------------------NIKVGSIVNAVIKGIKPNQLSVTMCNGHLRGRVHISNVFDDFNEGDQILKDYTPSQIIKTKVVAFKDVKTHNYLAVTSTHKTIHYAELTLKKSDMEKSSDEFTDGKQS---QLTDFEKGKEVNCFVTGLN--KYDIQVCVDPFIRGKIPILMSSKDSKDYDKLKSKYPNGTALKASITDVDEKHKLLVLSRIGQPSDLLKKHSNVVGRITKSLKN-GLLIELPNQKAGLAHVTELSDTFVDNPLDQHKLNTYVECQIIHVDTKNNHIDLSLRQSRILGQESVTEGIDKVVNGYDDLKEGDIIRGYVKACTKVGVFVSLSSNISGRVQIKNLSQFFVKD---YQSLFPVGKLVKAKILSINPTNNNIDLSLRGKDVNDRDPAPPPPKRKSTDDTDEGTKVTGDREENEEEGASQAKKRKIMDTSLDDGDADL------------------KEQDESDQDEE----------MSEADED------KESSEDEEDT-----EKETKPS----LDISGGFDWSADV-----KMNTQSDSEESENNEEDDKKSAKQTKRQKRAAKKAEEESLHKAELALLDTERQLESAEDFDRLVLGSPNSSIVWIQYMAFHLHAAEVDKAIAVGRKALKTISFREEQEKLNIWVALLNLENSYGTKASLETLFQEAVKANEPKKVYVKMVELYVKNDKNEEAEKLYQVMLKRFKQSKKVWVGYAYFLMKIGKHEEARALLQRSLKSLQQRKHVATILKFAIMEFKLGEAQRGGTIFESLLKNYPRKTDIWSIYIDMWIREQDFEQVRNIFERVITLSLSTKKMKFLFKRYVAFEEQHGDKTSVEKVRQKAAEYID 1775
            M   E  FPRGG   +   E +  +   E+D LF  +   G T +KK +K    T    I   +  K  ++  E  S + L + M +LG +KE++  E+++ LPNGL G+++ +++       A+  + +    +++         E F  G +V  +V  L     G K +++SL P +VN+ ++   +K GM++ G VS +EDHGY + +G D    FLP        +Q      LK+G     ++ K   N  + +++    +V  A+ + ++    +N+LPG + K  + +      FG     ++ F  V D MHL  K     T   ++ V   I+ V+P+T+ V +S  P        +   S + +G V+ D  VQ   K  G   ++ +G      ++ L+D +     +    G  H CR++ YS MD    LS++ S +E ++  Y+DI  G VVK TV++ ++YG ++K+   +RGL P +HLADI +K P KK+ I  +V CRVL   PE KK+ +T KKT++ S+ P++  YA AK G    GF+I V+ YG ++ FYN+V+ L+ K E+        E VFY G+VV+ V+++    +++M +S K S     KK       K  + ++    +  ++  K  D  EV          LP  HLSD   V+N  + L    +   +L+  +   Q   E + L+ C+K      ++ G++  +F ++    +  G V  I D+GVF+    GL GLAP + ++D+F    + +F  GQ+V AKV ++D EK+R +++L+ S+              +++ LL   L E   +            + L+S    V+I  +  +T  G+ L   V +V  +G            + KA+++   G + E G+  +  +  +++ +         + +      ++K  KL K    +++V +  +   +  L E  H +A      HLN+    +   +++   V     +T++ G+    L      A+ T  PT                          + +G +V   +K IKP  + VT+ +G + G +H S++ DD  EG          + +  +V+  +D+KT  YL ++         EL+++ S++E           S   ++  ++ G+ V CF+   N  K  ++V + P IRG+IP+L++S   K       K+  G AL+A++   D    LL LS  G     L++    +GR+ K   N GL +  P  K G   +  +SD++ + PL+       V C I+   T +N + LSLR SR    E+ ++  D  +N   D+KEG ++RGYV +    GVF  L  ++ G  +  ++SQ        Y    P GKL+ A++L +N   N ++LS    D    D      + + T   +  T+     EE +++G  + +KR          + ++                  +E  ES  ++E          +SE D+       +E  E+ E+T     EK+TKP+    L +S GF W+  +      +   ++S +SE +E+  + + K++K+++   K+  E+ L + E AL+D  RQ ESA+DFDRLVL SPNSSI+W+QYMAFHL A E++KA AV  +ALKTISFREEQEKLN+WVALLNLEN YG++ SL  +F+ AV+ NEP KV++ + ++Y K++K +EA +LY  MLKRF+Q K VW+ Y  FL++  +   +  +LQR+L+ L  ++HV  I KFA +EF+LG+A+R   IFE+ L  YP++TD+WS+YIDM I+    + VR+IFERVI LSL+ K+MKF FKRY+ +E+QHG +  V+ V+ KA EY++
Sbjct:    1 MANLEESFPRGGTRKIHKPE-KAFQQSVEQDNLFDISTEEGSTKRKKSQKGPAKTKKLKIEKRESSKSAREKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEI-----CDAYTKKLNEQVTQEQPLKDLLHLPELFSPGMLVRCVVSSLGITDRGKKSVKLSLNPKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSVGHSEVSTAIATEQQSWNLNNLLPGLVVKAQVQKVTP---FGLTLNFLTFFTGVVDFMHLDPKKAG--TYFSNQAVRACILCVHPRTRVVHLSLRPIFLQPGRPLTRLSCQNLGAVLDDVPVQGFFKKAGATFRLKDGVLAYARLSHLSDSKNVFNPEAFKPGNTHKCRIIDYSQMDELALLSLRTSIIEAQYLRYHDIEPGAVVKGTVLTIKSYGMLVKVGEQMRGLVPPMHLADILMKNPEKKYHIGDEVKCRVLLCDPEAKKLMMTLKKTLIESKLPVITCYADAKPGLQTHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFKLSSDPEPKKEPAGHSQKKGKAINIGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDH--VANGPL-LHHWLQAGDILHRVLCLSQS--EGRVLL-CRKPALVSTVEGGQDPKNFSEIHPGMLLIGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVAAKVTNVDEEKQRMLLSLRLSDCGLGDL------AITSLLLLNQCLEELQGV------------RSLMSNRDSVLIQTLAEMTP-GMFLDLVVQEVLEDGSVVFSGGPVPDLVLKASRYHRAGQEVESGQKKKVVILNVDLLKLEVHVSLHQDLV------NRKARKLRKGSEHQAIVQHLEKSFAIASLVETGH-LAAFSLTSHLNDTFRFDSEKLQVGQGVSLTL-KTTEPGVTGLLLAVEGPAAKRTMRPTQKDSETVDEDEEVDPALTVGTIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDG-IIGCIHASHILDDVPEGTSPTTKLKVGKTVTARVIGGRDMKTFKYLPISHPRFVRTIPELSVRPSELEDGHTALNTHSVSPMEKIKQYQAGQTVTCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRVGQALRATVVGPDSSKTLLCLSLTG--PHKLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSETPLEDFVPQKVVRCYIL--STADNVLTLSLRSSRT-NPETKSKVEDPEINSIQDIKEGQLLRGYVGSIQPHGVFFRLGPSVVGLARYSHVSQHSPSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSFLPGDTGKPDVLSASLEGQLTKQEERKTEA----EERDQKGEKKNQKRNEKKNQKGQEEVEMPSKEKQQPQKPQAQKRGGRECRESGSEQERVSKKPKKAGLSEEDDSLVDVYYREGKEEAEETNVLPKEKQTKPAEAPRLQLSSGFAWNVGLDSLTPALPPLAESSDSEEDEKPHQATIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTDVWSVYIDMTIKHGSQKDVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEYVE 1863          
The following BLAST results are available for this feature:
BLAST of TCONS_00008715-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RRP50.000e+030.26Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=... [more]
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