TCONS_00008587-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008587-protein
Unique NameTCONS_00008587-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008587-protein ID=TCONS_00008587-protein|Name=TCONS_00008587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp
VYKIDVMSQTSHWFVFKRYKEFYNLHQKLIKQYKIPKDLLPPRKITNNMA
KETLENRREALEHYLQKLLNSCNTGVRRSEDLAEFLDVKSHDVPHVTHDL
TRYICKHGQSILLSKEMFRMSPSQLYCITKQLQLPHPSGRNSVDLGYLYE
FVSELKRLSITDFISQMSNGEQHEISFTFDLSIFTKLQELQMDAINVESL
KGVQSLNSKLVKLTARHCINSMKSILIDAAIEKRNAPQVSHPGENWRIQA
AYRLAENRIIFQPWHTLTHINFSHNNIISFDSSMSLLPALRQLDLSHNKL
THLDLDLVTAPILHSLSLSNNSIYLISGSTKTIDNLRHLNLSHNKVNCLE
GLFCCQGLEELNLTYNNIAAINEVTKLSSLSRLSNLLVEGNHFAKKKRHR
IIIFAYFRERQLLLDKRPITQKEMAKLNSKLAALQRFEDIDDSLSNISTV
SDDSEPDSGYDHSNWVSKLAALSEIEESDYEVVPRLNWPEICNSGSNPVA
VPDDNTDVESISNPNEMISREEWDRILQVEPKPLDLSLVQNLSHRSDETL
KASTIRKTSATSNNDKTQQRKLASSRASENKTSPDKERTNSWLSNIFRKS
SSIQEQSSCINPIEEILGPSGAISSHSDQPDGNINIQGTLSTLGNTPGAK
NTSGLVVIPEVEETKASEVDPLARSFDDNAEFEKAEECDEGEEQTDE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004804XLOC_004804Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008587TCONS_00008587Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001683Phox
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0035091phosphatidylinositol binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0035091 phosphatidylinositol binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 51..71
NoneNo IPR availablePRINTSPR00019LEURICHRPTcoord: 290..303
score: 54.65
coord: 333..346
score: 41.97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 550..592
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 664..697
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 260..413
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 287..310
e-value: 0.047
score: 22.8
coord: 333..355
e-value: 12.0
score: 12.5
IPR001683Phox homologous domainSMARTSM00312PX_2coord: 1..89
e-value: 1.3E-4
score: 31.3
IPR001683Phox homologous domainPFAMPF00787PXcoord: 2..88
e-value: 4.4E-15
score: 55.6
IPR001683Phox homologous domainGENE3D3.30.1520.10coord: 1..101
e-value: 1.6E-22
score: 79.3
IPR001683Phox homologous domainPROSITEPS50195PXcoord: 1..93
score: 18.314
IPR001683Phox homologous domainSUPERFAMILY64268PX domaincoord: 1..93
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 260..300
e-value: 8.9E-7
score: 28.5
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 186..207
score: 4.632
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 312..333
score: 6.033
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 266..287
score: 7.019
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 357..378
score: 7.658
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 335..356
score: 8.79
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 289..311
score: 7.288
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 152..592
e-value: 1.7E-26
score: 92.0

Blast
[Close]
BLAST of TCONS_00008587-protein vs. Swiss-Prot (Human)
Match: NISCH (Nischarin OS=Homo sapiens GN=NISCH PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.119e-53
Identity = 140/451 (31.04%), Postives = 223/451 (49.45%), Query Frame = 0 
Query:    1 VYKIDVMSQTSHWFVFKRYKEFYNLHQKLIKQYKIPKDLLPPRKITNNMAKETLENRREALEHYLQKLLNSCNTGVRRSEDLAEFLDVKSHDVPHVTHDLTRYICKHGQSILLSKEMFRMSPSQLYCITKQLQLPHP---SGRNSVDLGYLYEFVSELKRLSITDFISQMSNGEQHEISFTFDLSIFTKLQELQMDAINVESLKGVQSLNSKLVKLTARHCINSMKSILIDAAIEKRNAPQVSHPGENWRIQAAYRLAENRIIFQPWHTLTHINFSHNNIISFDSSMSLLPALRQLDLSHNKLTHLDLDLVTAPILHSLSLSNNSIYLISGSTKTIDNLRHLNLSHNKVNCLEGLFCCQGLEELNLTYNNIAAINEVTKLSSLSRLSNLLVEGNHFAKKKRHRIIIFAYFRER--QLLLDKRPITQKEMAKLNSKLAALQRFEDIDDSLSN 446
            VY I V   +  W V  RY +F++LH+KL+ + KI K+LLPP+KI    ++  +E R + LE YLQKLL +      R   LA FL    +++  +T  L   + + G+ +L + E+F + P QLY +T+QLQ   P   SG    DLG++ +F   LK L ++            E    FDLSIF  L ++++   + + ++G+ +    L  L+ R    SMK +L+  A E           + W  +          +   W  LT ++ SHN++   D S+ L+P +  LDLSHN L  +D +L     L  L LS N +  + G    + N++ LNL+ N +  L GL     L  L+L  N I  + EV  + SL  L ++ +  N  +    +R  + A F ER  ++ LD    T+KE+  +   L A+Q+ +++   LSN
Sbjct:   32 VYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRV--LAHFLHFHFYEINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHILDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKPTLATLSVRFSATSMKEVLVPEASEF----------DEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVSEIDESVKLIPKIEFLDLSHNGLLVVD-NLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTLNLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVCLDDTVTTEKELDTVEV-LKAIQKAKEVKSKLSN 468
The following BLAST results are available for this feature:
BLAST of TCONS_00008587-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NISCH1.119e-5331.04Nischarin OS=Homo sapiens GN=NISCH PE=1 SV=3[more]
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