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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00008404-protein ID=TCONS_00008404-protein|Name=TCONS_00008404-protein|organism=Clytia hemisphaerica|type=polypeptide|length=3407bp
IVYNSYNLSFIPTDKTCDILDYHGVFQNEINIEYQNLKRRYDGRVYAIAP
HFVSGSKLQQGYIIKCGSVEDQGVKWRDVHLEETPRWEHLGMTMNQYEVK
ELTSDQPPGSDYYTFEGYLSRPLYVNGFSYDTQKIPKWVFEVQYLDENNN
VIHRTTISANYGKHWHEQFYKVWHVRAVLLPQFQNNNKMYKFKQTTKVFA
GMGSVFRPSGSQGFCYLPTCQKSHNVMHDITMKAMVTPQFNIRDPIAKFG
GTSIKWAINSETITSHTFKPIAGRHFVQLLGRSIRSNHHTLVYGRFKFTG
MTFISDASVIGQTPVHEDNGTLTFLFKKTQGNDYTMTLGQNYFAGDRTIG
KKMDRIARLVYVVKLPATSGQDLKISGGNGQGNPSTYIPVTLATTTSTPS
TTTALQTTTTTTTTTTTTTATTSQYTEGSTTTIQQVAVTLPTNIFWEQNE
YIFDGVTLNWIDAEFGCQMYDAHLVSILSQQEMTFLSEQFDQRGSNFWIG
LKRENWEPFSQWSDGNTLNFTHWDFERPFGSNDVECVHVALSSSVTPPAH
LWRDGHCAAEYHYVCKKTATKTSGTVVFNSFTTSWNQHEYFFGGNLLQWN
DANETCDNLGGNLASVLSDDEIDFLSAELTSRNLDNTTYWIGAYQSPGTS
LWYWTDNTPWSYSYWYYNRPEENLVENCLSLHYDSNDRYAMFDADCDAQS
AYVCKTARAGQSSTSTPTPPPSSNTELTFSTPPYYTNCDLRHCEVVVSVS
RSDDNEPSCTVSTYQAQQDVAPYHIDCPLSESIGELKKLGCEGETMDFVL
LVDVTITERVHGYCWNHAGDYMSFDLYFNHTTASEGLLQMLSVQTKPSGF
HIPIIESEHLKSVESLALLQKDTKGDLVDSYEFNYIEIRSTDGHNLQFHH
VLDNTGNYALKLTTLSRGGHREVVEKKLLVASLDLTSSKRFFKVPSSLEF
DGLYRIRFAVKHTTDDELEYRYSYDVDGILLTEADQLIPEYLYRLPSVNA
GDCHNVTVIVSASHAISTILQDSFCVDVGMNITLNLQLGQTLGTDSVVTV
NAYELGRNSCLAFSTGDGKMFILHEANAPHNTHNCISRGLDISGHSVQHV
GFRTHQDGHMTVDLIHNYQAVGNYHFRVTAKNDVHDQRETHIISVSDVDC
ESPVVEMRGIGIQEDLPVVHLRSESFRVELKRSINCIASNITRTVWTFNG
GELFDQPVNLTEYLSSQVAVHMKPRVLSYGLYKVCSTTYMMVDEMFHAMA
CGFLQIEPSPLEAVIEGGVEVQAAGELDYLIDATLSRDPDEDESLAHVQV
HFLCRSMDDPPFNLTLPNVLSFPYKSPSLENVNSPAFVSRGGCYGNGAGQ
IIGDEKLQVTLKTQNMIWDQTYELIIFMHALQPKNHPRTSFFVQKLSVVS
GSPPTVRIKGLKNSGRSINNRYPNNYEVELESADGTDSFQFQWLLYKCSN
EQGDGCVPVDHDKLQDMVSTDLDSLFYSTYAHAYEDNQWYKLAFRAYKTR
HVFGESSRMLLVNENPKSGSCAISPEVGTVLIDEYLISCSGWQDQHQPLT
YQFFTIIDDVKKPLCDSVDPECQTILPIGQSSEDYRLNVYASIMDRYKGR
TDVLLNVTVNKPVEIQSVFDDVINSVTSNDSTVDVLLESKEYLAFSNYAS
MYTSLLNEATENEQKVLANSTTNYNLTDNEKQEMRESKLKRMQLREELLK
KVDRVEVTTIEDINIVTGTNAEIVKIPNEIPPRTQETLLGQVDSFLQILD
DDDLSAEDVQESLSGVINMASKVALVSSNIVDVVNPNDLDVEAVRSLVGD
AEESKQKLLNQIKQTEDQLTKAQNLIGKFCVPGGAEIVVQSEGAQVAVRK
VLPTAKDASVQVSGSIGISFDPSILQPDVVGGQPSTTSSTTADNNMLADE
VTQHYSTAKNYTAVKLKNLQYNPYRHSSTASRVKSNVFGITLETRSGEPV
EVRNSRQPMLITIPNNPIQDGSESGNNSLSEEENSDVQSAFHKVEIRNES
LRAVLNPMDYVRLDVYLQSGKRPTPGEYLFKWRLPDSSSCKWKNISTNQN
ASIDVLNDNPDQFICTKDTYSIFISDKEQLDGIYYLGIFYYPQNSTTSNT
TQDAGTTKRRRRRNVANDTEEMDTDKIDEELCVIIKPPPPTPSPTLGPGT
FMDIAPVVTNTSLNYSLSITKAKCLFWEPVNETWTSQGCVVGSDTTPELT
HCLCDHLTDFGGDILVAPNPIDMNQVFEGLKNIGDNLGVLMVIVTLILLY
IVLCVWARKKDRQDEVDSRLVTVDCTTDDLEAKQTFLLNVLTGASSNSGT
TANVYCILTGSKGDSKIIPLSYQSRSLFKSRSTVVVKVLLEQDIGDLLSI
RVFHDNKGRSPSWFLRSILITDLETDEEFPFVCEDWLAVECSHGQLEKQL
HLAAPEEMKQPHLVFSSTISKGLIDGHIWFSVFLRPNQSTFTRVRRLTAC
LALIFLTMLTSAMFFGADDNPGSRKIAYLGNFKINFTGIIIGIQSSIIII
PPSLIIIEIFKRLGPRKEKKEGVDDNALDSEISVGVDSDPSSISSQQNLI
TKAHHIHSEKRKGDPFLLPNSFKYLAYFLVLVSVASSSVICFFYSMMWGA
RKSDEWLDSMFMGFFQSVLVIQPLKAVFLAVLLSIICRMPIKHDSVKINE
LAEKRSSLKSVNESKATQITELAKEDEEEVEEGFEEFAGNDGIISADEIP
IIRPTDSDLEKARKSALRDKITYVTIKEISIYVIFLIVVAKLAYAERDYH
TFMFREDLVNMFHRATYSGPETMDFDQVSNHGYFYSWIRDTLIPGVFAGP
WYNDEISKYEGFIDNHESLLVSIPRLRQLRVRKKSCHVPAEFKNLIEECD
GYYELYNEDDSSYGIAWTPYNISNYNRKRRDTTGWKVDHTSVKSDRYHRK
RRAVSASTSSASVGTAYHTMATGRSKQLRRRKEMRNLGAGVYYVSPEALL
PDGTILSCKDRWMYFTSDQLEGFPIPGRLTTYSGGGFIANLGYNEETSWT
VLADLHVHNWLDRQTRAVFTEFTVYNGNVNLFATAFLYIETLPTGGAFPW
VDFKVFNGYRYSAKDGLQSMWAEMLFIIFMLYYSAREISRMLKQGCSYFK
SFFNVLEFTLMPLYIVMFTLIIIRWLTASRNIQSFKANPKDFVSFQYSAA
SDEALMAVMGIICFLLNIKFMRLMQFAKLFFVVGKVMKSFSYPLLIFTIP
FTLYFLLFAWCAHLGFGGISEDYQTILRTITTQFLHLLGATDFEALKENN
PIFGPLYYLAFSGFMIMICFNMFMAIICEAIDGDYDEQFQKEAGDIHVFE
YMTRQLKDLLGLDETHEIRIDGEEDENEMLNQQNYEQTEQLLRDFELRVM
KIERYVDQHFVDVDLTTYEAPCDGEESDADRMKERLGVHPFIDGRESPSI
ELIRLKK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 3320..3340 |
| None | No IPR available | COILS | Coil | Coil | coord: 1798..1825 |
| None | No IPR available | COILS | Coil | Coil | coord: 1677..1697 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2097..2121 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1961..1986 |
| None | No IPR available | CDD | cd00037 | CLECT | coord: 588..705
e-value: 5.98264E-24
score: 100.002 |
| None | No IPR available | CDD | cd00037 | CLECT | coord: 451..567
e-value: 7.45084E-24
score: 99.6165 |
| IPR000203 | GPS motif | SMART | SM00303 | GPS_3 | coord: 2170..2221
e-value: 1.5E-9
score: 47.8 |
| IPR000203 | GPS motif | PFAM | PF01825 | GPS | coord: 2173..2210
e-value: 1.3E-6
score: 28.9 |
| IPR000203 | GPS motif | PROSITE | PS50221 | GPS | coord: 2171..2221
score: 12.936 |
| IPR001024 | PLAT/LH2 domain | SMART | SM00308 | LH2_4 | coord: 2284..2404
e-value: 1.5E-8
score: 44.4 |
| IPR001024 | PLAT/LH2 domain | PFAM | PF01477 | PLAT | coord: 2290..2393
e-value: 1.1E-16
score: 61.3 |
| IPR001024 | PLAT/LH2 domain | GENE3D | 2.60.60.20 | | coord: 2284..2411
e-value: 1.8E-28
score: 98.6 |
| IPR001024 | PLAT/LH2 domain | PROSITE | PS50095 | PLAT | coord: 2284..2401
score: 34.034 |
| IPR001024 | PLAT/LH2 domain | SUPERFAMILY | 49723 | Lipase/lipooxygenase domain (PLAT/LH2 domain) | coord: 2285..2391 |
| IPR001304 | C-type lectin-like | SMART | SM00034 | CLECT_2 | coord: 581..705
e-value: 3.2E-21
score: 86.5
coord: 440..566
e-value: 3.1E-20
score: 83.2 |
| IPR001304 | C-type lectin-like | PFAM | PF00059 | Lectin_C | coord: 458..567
e-value: 5.9E-16
score: 59.1
coord: 597..706
e-value: 2.6E-14
score: 53.8 |
| IPR001304 | C-type lectin-like | PROSITE | PS50041 | C_TYPE_LECTIN_2 | coord: 585..705
score: 18.727 |
| IPR001304 | C-type lectin-like | PROSITE | PS50041 | C_TYPE_LECTIN_2 | coord: 446..566
score: 20.66 |
| IPR016186 | C-type lectin-like/link domain | GENE3D | 3.10.100.10 | | coord: 390..571
e-value: 6.1E-26
score: 90.7 |
| IPR016186 | C-type lectin-like/link domain | GENE3D | 3.10.100.10 | | coord: 572..708
e-value: 8.7E-26
score: 90.1 |
| IPR002859 | PKD/REJ-like domain | PFAM | PF02010 | REJ | coord: 1183..1642
e-value: 4.0E-48
score: 164.2 |
| IPR013122 | Polycystin cation channel, PKD1/PKD2 | PFAM | PF08016 | PKD_channel | coord: 2959..3280
e-value: 3.1E-70
score: 236.9
coord: 2773..2871
e-value: 7.8E-15
score: 54.4 |
| IPR016187 | C-type lectin fold | SUPERFAMILY | 56436 | C-type lectin-like | coord: 581..705 |
| IPR016187 | C-type lectin fold | SUPERFAMILY | 56436 | C-type lectin-like | coord: 445..572 |
Blast
BLAST of TCONS_00008404-protein vs. Swiss-Prot (Human)
Match: PK1L2 (Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4) HSP 1 Score: 235.728 bits (600), Expect = 1.706e-61 Identity = 130/378 (34.39%), Postives = 218/378 (57.67%), Query Frame = 0
Query: 2145 TLGPGTFMDIAPVVTNTSLNYSLSITKAKCLFWEPVNETWTSQGCVVGSDTTPELTHCLCDHLTDFGGDILVAPNPIDMNQVFEGLKNIGDNLGVLMVIVTLILLYIVLCVWARKKDRQDEVDSRLVTVDCTTDDLEAKQTFLLNVLTGASSNSGTTANVYCILTGSKGDSKIIPLSYQSRSLFKSRSTVVVKVLLEQDIGDLLSIRVFHDNKGRSPSWFLRSILITDLETDEEFPFVCEDWLAVECSHGQLEKQLHLAAPEEMKQ-PHLVFSSTISKGLIDGHIWFSVFLRPNQSTFTRVRRLTACLALIFLTMLTSAMFFGADDNPGSRKIAYLGNFKINFTGIIIGIQSSIIIIPPSLIIIEIFKRLGPRKEKKE 2521
T+ P + ++ AP L ++ + C+FW+ V ETW GC VG T+P THCLC+HLT FG LV N I+++Q E DN V+ + L ++Y+++ +WAR+KD QD+ ++ ++ +D A+ +L+ V TG + T++ V L G G+ + L+ +F+ + + +G+L S+R++HDN G PSW++ +L+ DL D ++ F+C WL++ L+K +A ++ KQ HL F T S G DGHIW+S+F R +S+FTRV+R++ C +L+ TMLTS MF+G +P +K+ LG + + ++IG++SSI++ P +L+I++IF+ PR K++
Sbjct: 1256 TVVPESDLEPAP---GRDLTVGITTFLSHCVFWDEVQETWDDSGCQVGPRTSPYQTHCLCNHLTFFGSTFLVMSNAINIHQTAELFATFEDNPVVVTTVGCLCVVYVLVVIWARRKDAQDQAKVKVTVLE--DNDPFAQYHYLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHHLADPDTPVFERGAVDAFLLSTLFPLGELRSLRLWHDNSGDRPSWYVSRVLVYDLVMDRKWYFLCNSWLSINVGDCVLDKVFPVATEQDRKQFSHLFFMKT-SAGFQDGHIWYSIFSRCARSSFTRVQRVSCCFSLLLCTMLTSIMFWGVPKDPAEQKMD-LGKIEFTWQEVMIGLESSILMFPINLLIVQIFQNTRPRVAKEQ 1626 HSP 2 Score: 158.688 bits (400), Expect = 3.911e-38 Identity = 102/385 (26.49%), Postives = 181/385 (47.01%), Query Frame = 0
Query: 2962 WMYFTSDQLEGFPIPGRLTTYSGGGFIANLGYNEETSWTVLADLHVHNWLDRQTRAVFTEFTVYNGNVNLFATAFLYIETLPTGGAFPWVDFKVFNGYRYSAKDGLQS--MWAEMLFIIFMLYYSAREISRMLKQGCSYFKSFFNVLEFTLMPLYIVMFTLIIIRWLTASRNIQSFKANPKDFVSFQYSAASDEALMAVMGIICFLLNIKFMRLMQFAKLFFVVGKVMKSFSYPLLIFTIPFTLYFLLFAWCAHLGFGGISEDYQTILRTITTQFLHLLGATDFEALKENNPIFGPLYYLAFSGFMIMICFNMFMAIICEAIDGDYDEQFQKEAGDIHVFEYMTRQLKDLLGLDETHEIRIDGEEDENEMLNQQNYEQTEQLLRD 3344
W Y + DQ +G+PI G+LT Y GGG++ LG + + +L L + WLD TRAVF E TVYN NVNLF L +ET G F + Y ++ DG + AE+++ +F+LYY + RM K+ YF S +N+LE ++ + + R + A R++Q + + ++ +SF +AA+D AL ++ + L +K L++ ++ ++ + F I L ++ ++L FG Y+T+ T LG ++E + + +P+ G + FM + N+F+++I A + E G+I + + ++ LG+ E E + ++ + L +D
Sbjct: 2079 WQYQSQDQRQGYPIWGKLTVYRGGGYVVPLGTDRQKHVKILRYLFDNTWLDALTRAVFVESTVYNANVNLFCIVTLTLETSALGTFFTHAALQSLRLYPFT--DGWHPFVVAAELIYFLFLLYYMVVQGKRMSKETWGYFCSKWNLLELAIILASWSALAVFVKRAVLAERDLQRCRNHREEGISFSETAAADAALGYIIAFLVLLSTVKLWHLLRLNPKMNMITAALRRAWGDISGFMIVILTMLLAYSIASNLIFGWKLRSYKTLFDAAETMVSLQLGIFNYEEVLDYSPVLGSFLIGSCIVFMTFVVLNLFISVILVAFSEEQKYYQLSEEGEI--VDLLLMKILSFLGIKSKREEPGSSREQPGSLSQTRHSRPAQALPKD 2459
The following BLAST results are available for this feature:
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