TCONS_00008383-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00008383-protein
Unique NameTCONS_00008383-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00008383-protein ID=TCONS_00008383-protein|Name=TCONS_00008383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=851bp
MSQLPNIKKLVGRYDKRVSKMTTLEEMEKREKEIKVMLENAESLEERKQL
RTELRELRRKIFEAPTTTTTSISVTTKKEPEVSNTKVNIEKENAKNLDLN
GNKRISVTLNTSKPTPITIETKIKADTTSEQETEKPRTTSSESSTTSSNN
MSSSVARRSRLFQTDDNNNASKTESSAPQANGIKLKINDGGDNTPTLRTR
DPADRAARRARRAQQQREMSVDQGNTETNKEEAPKPTETVIVEAPKEEKK
EEPKTTTEQRKSTSTLSVGGTXNKEEALKPTETVIVEAPKEEKKEEPKTT
TEQRKSTSTLSVGGTGTKNTGSAGLRRTATWGAKDKNGAANNIGKALNKF
GPQLGESTPFQFGTDYTKKNNTPKPENTPRSFNKYTPGVATVKAPYTPVT
KSETTNAHSNGSVESTGARRPSFNKYTTPAMNFKNSQAIKENLDSSQEPQ
ESKVSSDVGTAFVPRKFSPTKDIMNQLEKNKSSTSTPSYNKYTPNKNPDS
GLNKVSRSVSMSAYERNLKKTQTPPEPSVSYNKLNRSISDSTNVTGLNRV
GTNNLTGLNRVNSNNLTGLNRVGSTNSATGLRSVSEESNSSSTTKRPVSS
YGGGGRFANLSSDPVPPPQPKPEPPKQNGTPSFGNPTGTQSAADRMAYFR
QAAEAEKKKVEEKKAAAEARQKQQEMLNAVMNGEVSMGSNKKEEEEKTPA
TRKESNEGGAKKGGSSAPCKRREKKKVTRRTMSIGSIVLDWVQEMIKDYP
VEVTNFSSSWNNGMAFCALIHAFNKDEFDFSELKPENKRYNFDLAFDTGY
KVKKIPKLLDTDDMVAMARPEPRSVQTYIQWIWSVYGPTSGYGPTPQEVQ
K
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004709XLOC_004709Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00008383TCONS_00008383Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001715CH-domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 24..60
NoneNo IPR availableCOILSCoilCoilcoord: 650..677
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 734..832
e-value: 3.2E-12
score: 56.6
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 714..839
e-value: 1.5E-20
score: 72.8
IPR001715Calponin homology domainPFAMPF00307CHcoord: 738..832
e-value: 1.8E-15
score: 56.9
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 732..834
score: 11.005
IPR001715Calponin homology domainCDDcd00014CHcoord: 737..836
e-value: 3.78221E-14
score: 68.8767
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 736..835

Blast
[Close]
BLAST of TCONS_00008383-protein vs. Swiss-Prot (Human)
Match: SMTL1 (Smoothelin-like protein 1 OS=Homo sapiens GN=SMTNL1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.793e-30
Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 0 
Query:  733 SIGSI---VLDWVQEMIKDYP-VEVTNFSSSWNNGMAFCALIHAFNKDEFDFSELKPENKRYNFDLAFDTGYKVKKIPKLLDTDDMVAMARPEPRSVQTYIQWIW 833
            +IG +   +L+W + M K Y  V++ NFSSSW++GMAFCALIH F  D FD++EL P  +R+NF LAF T  K+    +LLD DDMV +A P+ + V TYIQ ++
Sbjct:  339 AIGGVKNMLLEWCRAMTKKYEHVDIQNFSSSWSSGMAFCALIHKFFPDAFDYAELDPAKRRHNFTLAFSTAEKLADCAQLLDVDDMVRLAVPDSKCVYTYIQELY 443
The following BLAST results are available for this feature:
BLAST of TCONS_00008383-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMTL12.793e-3049.52Smoothelin-like protein 1 OS=Homo sapiens GN=SMTNL... [more]
back to top