TCONS_00008287-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00008287-protein
Unique Name	TCONS_00008287-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	250

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00008287-protein ID=TCONS_00008287-protein|Name=TCONS_00008287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MGDEEQKGVIAARETGPGPGRYALPSTCGYEKHDITKRMQPSYSFGQRLE
SSMFKKDSSPGPGYMVHPSITRYGKDGTPCYSILGRAKEQNSFKTPSPGA
YSPEKVHPQGEKHAPSYSMGQRTRYRKRDTTPSPNSYSLPQLLGNKVPCK
HASAAFSMTGRSKTGSFAEDLAKTPGPGHYRILDPNVVKRRGPAYSILGR
SYMPGDSTQKPGPGAHFPERVRSNKKAAPSFSLGIRHSEFITPLIIDVHD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004657	XLOC_004657	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00008287	TCONS_00008287	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR010736	SHIPPO-rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010736	Sperm-tail PG-rich repeat	PFAM	PF07004	SHIPPO-rpt	coord: 174..201 e-value: 0.012 score: 16.4 coord: 16..49 e-value: 0.0027 score: 18.4 coord: 211..238 e-value: 1.5E-4 score: 22.4 coord: 95..126 e-value: 2.1E-7 score: 31.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Blast

[Close]

BLAST of TCONS_00008287-protein vs. Swiss-Prot (Human)
Match: ODF3A (Outer dense fiber protein 3 OS=Homo sapiens GN=ODF3 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.193e-62
Identity = 110/243 (45.27%), Postives = 146/243 (60.08%), Query Frame = 0

Query:    7 KGVIAARETGPGPGRYALPSTCGYEKHDITKRMQPSYSFGQRLESSMFKKDSSPGPGYMVHPSITRYGKDGTPCYSILGRAKEQNSFKTPSPGAYSPEKVHPQGEKHAPSYSMGQRTRYRKRDTTPSPNSYSLPQLLGNKVPCKHASAAFSMTGRSKTGSFAEDLAKTPGPGHYRILDPNVVKRRGPAYSILGRSYMPGDSTQKPGPGAHFPERVRSNKKAAPSFSLGIRHSEFITPLIIDVH 249
            +G I A  + PGP +Y +P T G+ KH  TK   P+YSF  R    +  ++ SPGP Y V+P I R GKD  P YSILGR + +    TP PG Y PEK        APS+S+  RT+  + D+TP P +Y LP ++G     K +  +FS+ GRSK G F++DL KTPGP  YR  D  V K + P Y++  R   PGD T KPGPGAH PE+V   K  AP  + GI+HS+++TPL++DV 
Sbjct:   16 RGPIMALYSSPGP-KYLIPPTTGFMKHTPTKLRAPAYSF--RGAPMLLAENCSPGPRYNVNPKILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRVDSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLVDVE 254

The following BLAST results are available for this feature:

BLAST of TCONS_00008287-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00008287-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ODF3A	3.193e-62	45.27	Outer dense fiber protein 3 OS=Homo sapiens GN=ODF...	[more]

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TCONS_00008287-protein (polypeptide) - C. hemisphaerica