TCONS_00007806-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007806-protein
Unique NameTCONS_00007806-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007806-protein ID=TCONS_00007806-protein|Name=TCONS_00007806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=896bp
MAQQPSMQKGIVKQILSGDNVIIRGQPKGGPPPERQLALSNIVAPRLARR
AAGESPETKDEPCAWECREYLRTRLIGKEVQFCIEYKVPGSGKEYGCIFY
KRDGEWKNITEELVAEGLVEVRRGGIKPSDDQNNLNQLEDAAKAAKKGKW
ADDTKDRVRNVQWTFESPRNFVDQKKGKPINAIIEMVRDGSTVRAFLLPN
FEYVTVMLTGIKCPTSRRDENNKETFEPFAQEAKYFTDCRLLQREIQIIL
EGVSSSATQNFLGSIIHPAGNIAELLLKEGFAKCVDWSMGVLTSGHEKYR
QSERSAKEKKMRMWKDFVASSQPVLSIKEKDFNGKVVEVVNGDAIMVKVG
QDVKKIFFSSLRPPRAQPKDDGVVENGPSRDAKRGRPLYDIPYMFEAREF
LRKKLIGKKVHVRIDYIKPASDGYPERQCATVTISDINIAEALISKGLAT
CLRHRQDDDQRSSAYDELLAAENRAQKNAKGLHSNKEAPVHRIADLSGDV
SKSRQFLPFLQRAGRSTAVVEFCASGSRFRLYLPKETCLLTFLLAGISCP
RMKAFTPSGTQISEDEPMGSEAFRFSKEMALQREVEVQVDSIDKGGNFIG
WVFVDNVNVSLALVENGLAKMHFTAERSAYFKELEMAEDKAKAKKIGVWK
DFVEEVKETTVVIEDTERKTNYKKVIVTEITSGATFWAQTLDNASQFEQM
QQQLRQDLTDNPPLPGSLTPRRGDLVAAVFDVDNLWYRARIEKIEKDKVH
ALFVDYGNRDVVNATKLASLPAQFVTYPAQAREYTLACVKVPNDEEHVYE
LMQSFAKEAINREFSLNTEYKIGGQEFVTLSNPESKQDIGSVLISNGVLL
AEKRREKRLQKLISEYNQAQERARKNRVNLWRYGDFTEDDAPEFGA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004434XLOC_004434Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007806TCONS_00007806Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002999Tudor
IPR016071Staphylococal_nuclease_OB-fold
IPR016685Silence_cplx_Nase-comp_TudorSN
Vocabulary: Cellular Component
TermDefinition
GO:0016442RISC complex
Vocabulary: Biological Process
TermDefinition
GO:0031047gene silencing by RNA
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031047 gene silencing by RNA
cellular_component GO:0016442 RISC complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 852..879
NoneNo IPR availableGENE3D2.30.30.140coord: 695..761
e-value: 5.1E-18
score: 64.3
NoneNo IPR availableGENE3D2.40.50.90coord: 494..649
e-value: 1.1E-33
score: 115.5
coord: 1..150
e-value: 1.2E-23
score: 82.9
NoneNo IPR availableGENE3D2.40.50.90coord: 171..323
e-value: 1.4E-24
score: 85.9
NoneNo IPR availableGENE3D2.40.50.90coord: 762..871
e-value: 5.6E-17
score: 61.4
NoneNo IPR availableGENE3D2.40.50.90coord: 328..493
e-value: 1.1E-32
score: 112.2
NoneNo IPR availableCDDcd04508TUDORcoord: 723..767
e-value: 3.90625E-13
score: 64.5415
NoneNo IPR availableCDDcd00175SNccoord: 186..316
e-value: 7.61887E-31
score: 117.761
NoneNo IPR availableCDDcd00175SNccoord: 525..651
e-value: 1.00653E-29
score: 114.679
NoneNo IPR availableSUPERFAMILY63748Tudor/PWWP/MBTcoord: 693..789
IPR002999Tudor domainSMARTSM00333TUDOR_7coord: 718..775
e-value: 2.2E-14
score: 63.8
IPR002999Tudor domainPFAMPF00567TUDORcoord: 669..787
e-value: 4.4E-26
score: 91.2
IPR002999Tudor domainPROSITEPS50304TUDORcoord: 719..777
score: 16.527
IPR016071Staphylococcal nuclease (SNase-like), OB-foldSMARTSM00318SNASE_2coord: 514..651
e-value: 2.9E-34
score: 129.8
coord: 178..316
e-value: 1.1E-38
score: 144.5
coord: 330..485
e-value: 6.4E-41
score: 151.9
coord: 6..152
e-value: 1.7E-33
score: 127.3
IPR016071Staphylococcal nuclease (SNase-like), OB-foldPFAMPF00565SNasecoord: 38..152
e-value: 4.9E-7
score: 30.1
coord: 389..484
e-value: 7.3E-12
score: 45.6
coord: 205..316
e-value: 2.1E-13
score: 50.6
coord: 542..651
e-value: 1.3E-17
score: 64.1
IPR016071Staphylococcal nuclease (SNase-like), OB-foldPROSITEPS50830TNASE_3coord: 178..316
score: 30.344
IPR016071Staphylococcal nuclease (SNase-like), OB-foldPROSITEPS50830TNASE_3coord: 330..651
score: 28.718
IPR016071Staphylococcal nuclease (SNase-like), OB-foldPROSITEPS50830TNASE_3coord: 6..152
score: 28.164
IPR016071Staphylococcal nuclease (SNase-like), OB-foldSUPERFAMILY50199Staphylococcal nucleasecoord: 174..316
IPR016071Staphylococcal nuclease (SNase-like), OB-foldSUPERFAMILY50199Staphylococcal nucleasecoord: 508..651
IPR016071Staphylococcal nuclease (SNase-like), OB-foldSUPERFAMILY50199Staphylococcal nucleasecoord: 326..487
IPR016071Staphylococcal nuclease (SNase-like), OB-foldSUPERFAMILY50199Staphylococcal nucleasecoord: 5..153
IPR016071Staphylococcal nuclease (SNase-like), OB-foldSUPERFAMILY50199Staphylococcal nucleasecoord: 733..890
IPR016685RNA-induced silencing complex, nuclease component Tudor-SNPIRSFPIRSF017179RISC-Tudor-SNcoord: 1..895
e-value: 0.0
score: 1034.7

Blast
[Close]
BLAST of TCONS_00007806-protein vs. Swiss-Prot (Human)
Match: SND1 (Staphylococcal nuclease domain-containing protein 1 OS=Homo sapiens GN=SND1 PE=1 SV=1)

HSP 1 Score: 970.689 bits (2508), Expect = 0.000e+0
Identity = 498/906 (54.97%), Postives = 643/906 (70.97%), Query Frame = 0 
Query:    5 PSMQKGIVKQILSGDNVIIRGQPKGGPPPERQLALSNIVAPRLARRAAGESPETKD---EPCAWECREYLRTRLIGKEVQFCIEYKVPGSGKEYGCIFYKRDGEWKNITEELVAEGLVEVRRGGIKPSDDQNNLNQLEDAAKAAKKGKWAD-DTKDRVRNVQWTFESPRNFVDQKKGKPINAIIEMVRDGSTVRAFLLPNFEYVTVMLTGIKCPTSRRDENNKETFEPFAQEAKYFTDCRLLQREIQIILEGVSSSATQNFLGSIIHPAGNIAELLLKEGFAKCVDWSMGVLTSGHEKYRQSERSAKEKKMRMWKDFVASSQPVLSIKEKDFNGKVVEVVNGDAIMVKVGQ-DVKKIFFSSLRPPRAQPKDDGVVENGPSRDAKRGRPLYDIPYMFEAREFLRKKLIGKKVHVRIDYIKPASDG------YPERQCATVTISDINIAEALISKGLATCLRHRQDDDQRSSAYDELLAAENRAQKNAKGLHSNKEAPVHRIADLSGDVSKSRQFLPFLQRAGRSTAVVEFCASGSRFRLYLPKETCLLTFLLAGISCPRMKAFTPSGTQISEDEPMGSEAFRFSKEMALQREVEVQVDSIDKGGNFIGWVFVDNVNVSLALVENGLAKMHFTAERSAYFKELEMAEDKAKAKKIGVWKDFVEE-VKETTVVIEDTERKTNYKKVIVTEITSGATFWAQTLDNASQFEQMQQQLRQDLTDNPPLPGSLTPRRGDLVAAVFDVDNLWYRARIEKIEKD-KVHALFVDYGNRDVVNATKLASLPAQFVT--YPAQAREYTLACVKVPNDEEHVYELMQSFAKEAINREFSLNTEYKIGGQEFVTLSNPESKQDIGSVLISNGVLLAEKRREKRLQKLISEYNQAQERARKNRVNLWRYGDFTEDDAPEFG 895
            P++Q+GI+K +LSG  +I+RGQP+GGPPPERQ+ LSNI A  LARRAA   P+ KD   EP A+  RE+LR +LIGKEV F IE K P  G+EYG I+  +D   +NI E LVAEGL   R G    + +QN L++ E+ AKAAKKG W++ +    +R++++T E+PR+FVD    KP+NAIIE VRDGS VRA LLP++  VTVML+GIKCPT RR+ +  ET EPFA EAK+FT+ RLLQR++QIILE   S   QN LG+I+HP GNI ELLLKEGFA+CVDWS+ V T G EK R +ER AKE+++R+W+D+VA +   L  K+K F  KV++V+N DAI+VK+   D K I  SS+RPPR +       EN   ++ K+ RPLYDIPYMFEAREFLRKKLIGKKV+V +DYI+PAS        + ER CATVTI  INIAEAL+SKGLAT +R+RQDDDQRSS YDELLAAE RA KN KGLHS KE P+HR+AD+SGD  K++QFLPFLQRAGRS AVVE+  SGSR +LYLPKETCL+TFLLAGI CPR     P   Q  E EP   EA  F+KE+ LQREVEV+V+S+DK GNFIGW+ +D  N+S+ LVE+ L+K+HFTAERS+Y+K L  AE+ AK KK  VW  + E+ V+E   V+E+ ER  +YK V VTEIT    F+ Q ++  +Q E++ + +R D+  +PP+ GS  PRRG+   A F VD  WYRAR+EK+E   K+H  ++DYGNR+V+ +T+L +L   F T   PAQA EY  A ++VP D++   + + S  ++  N +  LN E+   G   VTL   +SK D+G  L+  G+++ E R+EK+ QK+I+EY  AQE A+  R+NLWRYGDF  DDA EFG
Sbjct:   17 PTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLARRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTP-QGREYGMIYLGKDTNGENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTIENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSETPEPFAAEAKFFTESRLLQRDVQIILE---SCHNQNILGTILHPNGNITELLLKEGFARCVDWSIAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTAN-LDQKDKQFVAKVMQVLNADAIVVKLNSGDYKTIHLSSIRPPRLEG------ENTQDKN-KKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQ--EGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRADDADEFG 907
The following BLAST results are available for this feature:
BLAST of TCONS_00007806-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SND10.000e+054.97Staphylococcal nuclease domain-containing protein ... [more]
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