Prdl-b (polypeptide) - C. hemisphaerica

Overview
NamePrdl-b
Unique NameTCONS_00007721-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007721-protein ID=TCONS_00007721-protein|Name=Prdl-b|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MENELHVFGNDVHNLEPPFDQNMNFSERRKRTSYKIEDILGIKIKTSDGE
EESDESMENLSPTTSGSLNGSEDDSDVFDNSPTLDHNTLMTTVADQHVNS
LSASPTNNFMAMSGVTHNRPRIPIKKRRYRTTFTTHQLEELESIFNRTHY
PDVFLREEIALKLGLTEARIQVWFQNRRAKWRKRNKTNVNQPHHIPFGSS
ATSNQMNPLQSNTAMRLMNKSCR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004378XLOC_004378Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007721TCONS_00007721Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000047HTH_motif
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 164..180
score: 56.03
coord: 155..164
score: 44.17
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 126..188
e-value: 5.3E-28
score: 109.0
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 127..183
e-value: 1.7E-24
score: 85.3
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 124..184
score: 20.747
NoneNo IPR availableGENE3D1.10.10.60coord: 120..195
e-value: 1.9E-31
score: 107.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..83
NoneNo IPR availableCDDcd00086homeodomaincoord: 127..185
e-value: 2.08381E-24
score: 91.536
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 159..182
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 109..186

Blast
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BLAST of Prdl-b vs. Swiss-Prot (Human)
Match: ARX (Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.823e-30
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 0 
Query:  125 KKRRYRTTFTTHQLEELESIFNRTHYPDVFLREEIALKLGLTEARIQVWFQNRRAKWRKRNKTNVN 190
            K+RRYRTTFT++QLEELE  F +THYPDVF REE+A++L LTEAR+QVWFQNRRAKWRKR K    
Sbjct:  327 KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQ 392
The following BLAST results are available for this feature:
BLAST of Prdl-b vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARX4.823e-3072.73Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 S... [more]
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