TCONS_00007638-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007638-protein
Unique NameTCONS_00007638-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007638-protein ID=TCONS_00007638-protein|Name=TCONS_00007638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MANEQLPSSINKKFEELDESLTDLQTSLKAFLKIPVTDIREKVKDPLENA
KLDLMVAYTANSLFWTYLITQGIDPKTHPIKDELLRIKQYMGKIKLAEEK
KTMARVDTSAAKRFVRNALWTPSSEDTNSTEKSNTDPAPEYKQTNRKDKK
DKKRKNEDRNEKETNNKDKKKKKKKKKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004312XLOC_004312Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007638TCONS_00007638Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 146..178
NoneNo IPR availableCOILSCoilCoilcoord: 80..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..178
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 14..93
e-value: 1.8E-18
score: 66.9

Blast
[Close]
BLAST of TCONS_00007638-protein vs. Swiss-Prot (Human)
Match: C1D (Nuclear nucleic acid-binding protein C1D OS=Homo sapiens GN=C1D PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.920e-34
Identity = 54/126 (42.86%), Postives = 81/126 (64.29%), Query Frame = 0 
Query:    3 NEQLPSSINKKFEELDESLTDLQTSLKAFLKIPVTDIREKVKDPLENAKLDLMVAYTANSLFWTYLITQGIDPKTHPIKDELLRIKQYMGKIKLAEEKKTMARVDTSAAKRFVRNALWTPSSEDTN 128
            NE  P  I++     + S+  +   LK  + +   ++ +K+ DPLE AK+DL+ AYT NS+FW YL TQG++PK HP+K EL RI+ YM ++K   +KK   ++D  AA RFV+NALW P S++ +
Sbjct:    7 NEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKL-DPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKSKNAS 131
The following BLAST results are available for this feature:
BLAST of TCONS_00007638-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
C1D4.920e-3442.86Nuclear nucleic acid-binding protein C1D OS=Homo s... [more]
back to top