TCONS_00007605-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007605-protein
Unique Name	TCONS_00007605-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	492

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007605-protein ID=TCONS_00007605-protein|Name=TCONS_00007605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MVQEILLQNRGLKMTKEESLDGETMTLSEKWKEFCDETTIHGFRAAFFSR
NTCLKVFWRILLILATLLAGFLFYGVLMQYLKYEFKVSKEIDFNMDEVNF
PRVTICNINSLSQKKINELGYQGDVDELIDFYHQMRGKTLNVSSPDTKRI
LNYFYAKNLNKTHDIISAFELGKREMLDDPFMRRVFPFSCKYENKPCSVD
NFTEIFSFSYGKCIAFPKNKKDVLKGKFSGPGLQLTLNIHEEDMLDSRAT
FNGLAVFIHHQRETYRSDLSKKVFVPPGTMNNIHITVSMLESLPPPYSTK
CGSKKYEVIDPNFAYSANLCAVDCISKIYSEECGCLTSDLKKFQDNIPEC
SMEQYDCYVRVYNHLLDNRTYRKCYQTCPTPCTMETFSLQTGQAKIGTKF
LYKRLSEMRNLTFQESQDYISHNVVGLNIAFADVIYTKEKLTPSVDWKVL
LATIGGSLGLCLGCSLITIIEFIVFCLTYLPFNKRKTQPSTK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004292	XLOC_004292	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007605	TCONS_00007605	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001873	Epithelial sodium channel	PRINTS	PR01078	AMINACHANNEL	coord: 455..471 score: 45.41 coord: 187..198 score: 26.33 coord: 201..217 score: 33.65 coord: 378..398 score: 23.24 coord: 441..455 score: 25.6 coord: 96..112 score: 42.35 coord: 228..246 score: 26.53 coord: 315..326 score: 29.67
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 34..475 e-value: 6.7E-72 score: 242.7
None	No IPR available	GENE3D	1.10.287.770		coord: 414..481 e-value: 1.0E-13 score: 50.6
None	No IPR available	GENE3D	2.60.470.10		coord: 91..344 e-value: 1.1E-31 score: 109.8

Blast

[Close]

BLAST of TCONS_00007605-protein vs. Swiss-Prot (Human)
Match: ASIC1 (Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC1 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 4.402e-29
Identity = 123/486 (25.31%), Postives = 202/486 (41.56%), Query Frame = 0

Query:   12 LKMTKEESLDGETMTLSEKWKEFCDETTIHGFRAAFFSRNTCLKVFWRILLILATLLAGFLFYGVLMQYLKYEFKVSKEIDFNMDEVNFPRVTICNINSL--SQKKINELGYQGDVDELIDFYHQMRGKTLNVSSPDTKRILNYFYAKNLNKTHDIISAFELGKREMLDDPFMRRVF-----------PFSCKYENKPCSVDNFTEIFSFSYGKCIAFPKNKKD-----VLKGKFSGPGLQLTLNIHEEDML------DSRATFNGLAVFIHHQRETYRSDLSKKVFVPPGTMNNIHITVSMLESLPPPYSTKCGSKKYEVIDPNFAYSANLCAVDCISKIYSEECGCLTSDLKKFQDNIPECSMEQY-DCYVRVYNHLLDNRTYRKCYQTCPTPCTMETFSLQTGQAKIGTKFLYKRLSEMRNLTFQESQDYISHNVVGLNIAFADVIYTKEKLTPSVDWKVLLATIGGSLGLCLGCSLITIIEF 472
            +++  EE   G    +S   + F   +T+HG    F      LK     L  L +L          +QY  +   V+K  +    ++ FP VT+CN+N    SQ   N+L + G++  L++  +++         PDT+        K L    D     +   R     PF  R F             SC +  + CS ++F  +F+  YGKC  F   +        +KG  +G GL++ L+I +++ L      D  +   G+ V IH Q E    D      V PG    +      L  LPPP+ T         +D   +YS   C +DC ++   E C C    +     + P C+ EQY +C     + L++       Y  C  PC +  +  +    KI +K   K L++     F +S+ YI  N++ L+I F  + Y   +   + +   LL  IGG +GL +G S++T++E 
Sbjct:    1 MELKAEEEEVGGVQPVS--IQAFASSSTLHGLAHIFSYERLSLKRALWALCFLGSLAVLLCVCTERVQYYFHYHHVTKLDEVAASQLTFPAVTLCNLNEFRFSQVSKNDLYHAGELLALLNNRYEI---------PDTQMADE----KQLEILQD-----KANFRSFKPKPFNMREFYDRAGHDIRDMLLSCHFRGEVCSAEDFKVVFT-RYGKCYTFNSGRDGRPRLKTMKGG-TGNGLEIMLDIQQDEYLPVWGETDETSFEAGIKVQIHSQDEPPFID-QLGFGVAPGFQTFVACQEQRLIYLPPPWGTCKAVTMDSDLDFFDSYSITACRIDCETRYLVENCNC---RMVHMPGDAPYCTPEQYKECADPALDFLVEKDQE---YCVCEMPCNLTRYGKELSMVKIPSKASAKYLAK----KFNKSEQYIGENILVLDIFFEVLNYETIEQKKAYEIAGLLGDIGGQMGLFIGASILTVLEL 453

The following BLAST results are available for this feature:

BLAST of TCONS_00007605-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007605-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC1	4.402e-29	25.31	Acid-sensing ion channel 1 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00007605-protein (polypeptide) - C. hemisphaerica