TCONS_00007586-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007586-protein
Unique Name	TCONS_00007586-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1122

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007586-protein ID=TCONS_00007586-protein|Name=TCONS_00007586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1122bp
MKKSQQSTLFQTWGYADKEKNDKKRNKEKKEIKQIKGAIEFKGKKPEKQN
QQKDDIINLDDFDDDDIFNNIDTLDCQQPQTSSNRNDKQNHIPANRNQQH
NNNNQQDQTTRHQNNEKQLQYKPQEIYLDPRNKNRTFPHENIPGFDEQFG
STYIYPTNYPIRDYQFNIVKKALIENTLVVLPTGLGKTFIAAVVMYNFYR
WYPQRKLIFMAPTKPLVAQQIEACYKIMGIPPKDSIEMTGNIAPTKREIE
WKNKRVFFMTPQVLQNDLARGSCNAADIVCLVFDEAHKALGSHAYSQVIR
EVNGIHQQFRVLALSATPGDNMNAVQEVINNLMISHIELRSEESIDIQKY
VHERKVEKIVVPLSGEVKNAQEVFLEVLQSIVLRLFSRKAIWSKDASKVS
KFMLLKAREQWRANNAFQDRTTAGYVEGDFALLMSLYHAYDLLQQHGLLS
FYTFIKALLSGSKGTSKAKMELNRNEKLMNLMEDLHSRIEPEDGNQSLNE
TIVAEKHMTPKQRLLKSIPKPRKNFVSHPKMVKLEEIVVQHFQSYADKMI
EPCSSQTPLNTRVMIFSQFRDSVQEITAVLSRHEPLVKCMSFIGQGSKDG
VNNKTNKGLSQKEQIEILRRFRAGGYNTVVSTCVGEEGLDIGDVDLIVCF
DASNSPIRLVQRMGRTGRKRKGRIVILVGEGKEEMIYKKSLSNKKGIHKN
LCNAAKSLVLNEEAPRMIPKHLNPTCYQMKINIQEKTNAGQSTDRDKKNE
KTASKTKSTKRSSSTATNGNIRNLLGKGYLDQDEQKYYKEHFEFELGCDA
CQKQQRLHEKKPLCSHRLSRWAPWQTSLQSYSKVGHSNRSKTFCRLMEAA
ENFRSPENVEDYEKSLAKYVVVSCEKKRTPPSSTTKSAKKTGKDFRKNII
NCDSMSEDSDFDLGRKVPPLSKKKQDEMKPCSLEEMKEKIEKSTSSKSSK
KSRVRLTRLPNVPKIDLDLSDICDNQIGFCSQKTMPTLFDRCQLKKRKRE
SMPAFDEGEEDSDYDFDGDRKRVKLNESIDDDDNSLNGERDLLSDDDESL
LNGNLLDEDGNLLNREEHLLSGKENEMKQDKDFMNGDDDLLKNGVDTEDK
FWNDDFPDNVECEKNKVMNKCL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004281	XLOC_004281	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007586	TCONS_00007586	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C
IPR031879	FANCM-MHF-bd
IPR006935	Helicase/UvrB_N
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0003677	DNA binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1118..1122
None	No IPR available	GENE3D	1.20.1320.20		coord: 366..478 e-value: 6.7E-31 score: 106.3
None	No IPR available	GENE3D	3.40.50.300		coord: 479..700 e-value: 3.8E-29 score: 100.6
None	No IPR available	GENE3D	3.40.50.300		coord: 157..351 e-value: 5.7E-26 score: 90.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 737..773
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 908..955
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 999..1019
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1026..1045
None	No IPR available	CDD	cd00046	DEXDc	coord: 175..318 e-value: 3.24522E-22 score: 93.9412
None	No IPR available	CDD	cd00079	HELICc	coord: 533..677 e-value: 3.58356E-22 score: 93.4564
None	No IPR available	CDD	cd12091	FANCM_ID	coord: 371..482 e-value: 1.61936E-29 score: 114.313
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 157..354 e-value: 2.3E-26 score: 103.6
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 168..336 score: 21.455
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 574..670 e-value: 1.4E-20 score: 84.4
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 560..669 e-value: 1.7E-18 score: 66.9
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 545..716 score: 17.689
IPR031879	Fanconi anemia group M protein, MHF binding domain	PFAM	PF16783	FANCM-MHF_bd	coord: 804..870 e-value: 6.1E-9 score: 35.8
IPR006935	Helicase/UvrB, N-terminal	PFAM	PF04851	ResIII	coord: 162..319 e-value: 1.8E-20 score: 73.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 267..299 coord: 18..93 coord: 157..239
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 530..687 coord: 205..356

Blast

[Close]

BLAST of TCONS_00007586-protein vs. Swiss-Prot (Human)
Match: FANCM (Fanconi anemia group M protein OS=Homo sapiens GN=FANCM PE=1 SV=2)

HSP 1 Score: 635.95 bits (1639), Expect = 0.000e+0
Identity = 338/747 (45.25%), Postives = 470/747 (62.92%), Query Frame = 0

Query:  144 GFDEQFGSTYIYPTNYPIRDYQFNIVKKALIENTLVVLPTGLGKTFIAAVVMYNFYRWYPQRKLIFMAPTKPLVAQQIEACYKIMGIPPKDSIEMTGNI-APTKREIEWKNKRVFFMTPQVLQNDLARGSCNAADIVCLVFDEAHKALGSHAYSQVIREVNGIHQQFRVLALSATPGDNMNAVQEVINNLMISHIELRSEESIDIQKYVHERKVEKIVVPLSGEVKNAQEVFLEVLQSIVLRLFSRKAIWSKDASKVSKFMLLKAREQWRANNAFQ-DRTTAGYVEGDFALLMSLYHAYDLLQQHGLLSFYTFIKALLSGSKGTSKAKMELNRNEKLMNLMEDLHSRIEPEDGNQSLNETIVAEKHMTPKQRL--LKSIPKPRKNFVSHPKMVKLEEIVVQHFQSYADKMIEPCSSQTPLNTRVMIFSQFRDSVQEITAVLSRHEPLVKCMSFIGQGSKDGVNNKTNKGLSQKEQIEILRRFRAGGYNTVVSTCVGEEGLDIGDVDLIVCFDASNSPIRLVQRMGRTGRKRKGRIVILVGEGKEEMIYKKSLSNKKGIHKNLCNAAKSLVLNEEAPRMIPKHLNPTCYQMKINIQEKTNAGQSTDRDKKNEKTASKTKSTKRSSSTATNGNIRNLLGKG-YLDQDEQKYYKEHFEF-------ELGCDACQ-KQQRLHEKKP-------LCSHRLSRWAPWQTSLQSYSKVGHSNRSKTFCRLMEAAENFRSPENVEDYEKSLAKYV 870
            GF    G+ +IYPTN P+RDYQ +I + AL  NTLV LPTGLGKTFIAAVVMYNFYRW+P  K++FMAPTKPLV QQIEACY++MGIP     EMTG+  A T++EI W +KRV F+TPQV+ NDL+RG+C AA+I CLV DEAHKALG++AY QV+RE+      FR+LALSATPG ++ AVQ+VI NL+I  IELRSE+S DI  Y HERKVEK++VPL  E+   Q+ ++++L+S    L  R  +  +D   ++K+ ++ AR+Q+R N +        G +EG+FA+ +SLYH Y+LLQQ G+ S Y F+  ++ G+KG +++K EL RNE  M L   L              E + A    T    +  ++   K +K   SHPK+ KLEE+V++HF+S+     E  + +    TRVMIFS FRDSVQEI  +LS+H+P+++ M+F+G  S      K+ KG +QKEQ+E++++FR GGYNT+VSTCVGEEGLDIG+VDLI+CFD+  SPIRLVQRMGRTGRKR+GRIVI++ EG+EE IY +S SNK+ I+K + +  + L   + +PRM+P  +NP  ++M I     T+     ++  +N +  S   S +       +G  ++ L K  +L ++E K +   +         E+     Q    +  E KP       +    LS W  WQ       +V HS+R + F  LM+  E  R  E    YE  +  Y+
Sbjct:   74 GFCTSAGALWIYPTNCPVRDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYQVMGIPQSHMAEMTGSTQASTRKEI-WCSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQVITNLLIGQIELRSEDSPDILTYSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVLMRRDIPNLTKYQIILARDQFRKNPSPNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRSKNELGRNEDFMKLYNHL--------------ECMFARTRSTSANGISAIQQGDKNKKFVYSHPKLKKLEEVVIEHFKSWN---AENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQHQPIIRVMTFVGHAS-----GKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQSQSNKRSIYKAISSNRQVLHFYQRSPRMVPDGINPKLHKMFI-----THGVYEPEKPSRNLQRKSSIFSYR-------DGMRQSSLKKDWFLSEEEFKLWNRLYRLRDSDEIKEITLPQVQFSSLQNEENKPAQESTTGIHQLSLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSYELEVESYL 785

The following BLAST results are available for this feature:

BLAST of TCONS_00007586-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007586-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FANCM	0.000e+0	45.25	Fanconi anemia group M protein OS=Homo sapiens GN=...	[more]

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TCONS_00007586-protein (polypeptide) - C. hemisphaerica