TCONS_00007496-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007496-protein
Unique Name	TCONS_00007496-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	387

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007496-protein ID=TCONS_00007496-protein|Name=TCONS_00007496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
FRQNQNNIDPIRNKKTKEKMKNLFKIVTSPLLDSSALHYRASMVECCRYI
SKKAPAKEGKTRMMRKDQTDKHTEIIEVDKSDKHRYFKWNYQPLPTQTSE
DVVNPHFNIRSPDFKLPNPRGRLARSVWRQRIAEVQAARNDPELEKLSRH
RKLFLPLEEIEAEWKHEFGIHDVNKLIRFNQISRDLFHSDDVIMNTWLDI
AFTDVKIHRGNLVQPSQLLTAPTSISFTPKEGQLYTLIVSNLDGHPEGTG
DEVLQWMVSNISNGDVQNSDTILNYLPPLPWQGTGHHRLTFTLYHQTEGR
VQADPINEQNMLKNRCMTSHEFATANHLLPVGITWCQVTWDESVSETCKL
LKDLSGEPVFEMEEYLEPKVEQEMLMRKWSELKYRNM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004228	XLOC_004228	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007496	TCONS_00007496	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008914	PEBP

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008914	Phosphatidylethanolamine-binding protein	PFAM	PF01161	PBP	coord: 224..323 e-value: 1.4E-9 score: 38.3
IPR008914	Phosphatidylethanolamine-binding protein	GENE3D	3.90.280.10		coord: 174..356 e-value: 9.7E-29 score: 99.9
IPR008914	Phosphatidylethanolamine-binding protein	SUPERFAMILY	49777	PEBP-like	coord: 186..348
None	No IPR available	CDD	cd00866	PEBP_euk	coord: 198..338 e-value: 2.75104E-27 score: 104.378

Blast

[Close]

BLAST of TCONS_00007496-protein vs. Swiss-Prot (Human)
Match: RM38 (39S ribosomal protein L38, mitochondrial OS=Homo sapiens GN=MRPL38 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.832e-27
Identity = 93/356 (26.12%), Postives = 165/356 (46.35%), Query Frame = 0

Query:   35 SALHYRASMVECCRYISKKAPAKEGKTRMMRKDQTDKHTEIIEVDKSDKHRYFKWNYQPLPTQTSEDVVNPH--------FNIRSP-----DFKLPNPRGRLARSVWRQRIAEVQAARNDPELEKLSRHRKLFLPLEEIEAEWKHEFGIHDVNKLIRFNQISRDLFHSDDVIMNTWLDIAFTD-----VKIHRGNLVQPSQLLTAPTSISFTPKEGQLYTLIVSNLDGHPEGTGDEVLQWMVSNISNGDVQNSDTILNYLPPLPWQGTGHHRLTFTLYHQTEGRVQADPINEQN--------MLKNRCMTSHEFATANH--LLPVGITWCQVTWDESVSETCKLLKDLSGEPVFEM 362
            +A  +RA++ EC R+      A  G+         +   ++  +++ +K+R F   Y+    +  ++   PH        F  ++      D  LP P+    + +  ++ A +Q  R + E E+ +R R   +PL+ + AEW+   G +   +L  +  + RDLFH    +    L +A+       + ++ GN V P++   AP  +++  +EG L+TL++++LDGH      E L W+++NI    V        YLPP P +G+G HRL F L+ Q +      PI+            L  R   + +F   +   + P G+++ Q  WD+SV+     L D+  EPVFE 
Sbjct:    2 AAPWWRAALCECRRWRGFSTSAVLGRRTPPLGPMPNSDIDLSNLERLEKYRSFD-RYR---RRAEQEAQAPHWWRTYREYFGEKTDPKEKIDIGLPPPKVSRTQQLLERKQA-IQELRANVEEERAARLRTASVPLDAVRAEWERTCGPYHKQRLAEYYGLYRDLFHGATFVPRVPLHVAYAVGEDDLMPVYCGNEVTPTEAAQAP-EVTYEAEEGSLWTLLLTSLDGHLLEPDAEYLHWLLTNIPGNRVAEGQVTCPYLPPFPARGSGIHRLAFLLFKQDQ------PIDFSEDARPSPCYQLAQRTFRTFDFYKKHQETMTPAGLSFFQCRWDDSVTYIFHQLLDMR-EPVFEF 344

The following BLAST results are available for this feature:

BLAST of TCONS_00007496-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007496-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RM38	2.832e-27	26.12	39S ribosomal protein L38, mitochondrial OS=Homo s...	[more]

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TCONS_00007496-protein (polypeptide) - C. hemisphaerica