TCONS_00007331-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007331-protein
Unique NameTCONS_00007331-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length119

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007331-protein ID=TCONS_00007331-protein|Name=TCONS_00007331-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MNWISGVQIVLLLHCLGYSSGWNEEMDLFRDLFLTNEGYTSKARPVLDKS
KPVIVKMNIALAQVVELNDRDQSLTTNIWIRQFWKNEFLTWNPSDYANIT
ELTITKNWIWTPDLVLYNR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004110XLOC_004110Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007331TCONS_00007331Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002394Nicotinic_acetylcholine_rcpt
IPR006202Neur_chan_lig-bd
Vocabulary: Molecular Function
TermDefinition
GO:0022848acetylcholine-gated cation-selective channel activity
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0045211postsynaptic membrane
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0045211 postsynaptic membrane
molecular_function GO:0022848 acetylcholine-gated cation-selective channel activity
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002394Nicotinic acetylcholine receptorPRINTSPR00254NICOTINICRcoord: 62..78
score: 32.42
coord: 96..110
score: 26.74
coord: 114..119
score: 26.75
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainPFAMPF02931Neur_chan_LBDcoord: 28..118
e-value: 6.2E-26
score: 91.1
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainGENE3D2.70.170.10coord: 20..119
e-value: 1.5E-29
score: 102.5
IPR006202Neurotransmitter-gated ion-channel ligand-binding domainSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 24..118

Blast
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BLAST of TCONS_00007331-protein vs. Swiss-Prot (Human)
Match: ACH10 (Neuronal acetylcholine receptor subunit alpha-10 OS=Homo sapiens GN=CHRNA10 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.613e-23
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 0 
Query:   26 MDLFRDLFLTNEGYTSKARPVLDKSKPVIVKMNIALAQVVELNDRDQSLTTNIWIRQFWKNEFLTWNPSDYANITELTITKNWIWTPDLVLYNR 119
            + LFRDLF     YTS  RPV D  + + V + + L+Q++++++R+Q LT  +WIRQ W + +L W+P+ Y  +  + I  + +W PD+VLYN+
Sbjct:   31 LKLFRDLF---ANYTSALRPVADTDQTLNVTLEVTLSQIIDMDERNQVLTLYLWIRQEWTDAYLRWDPNAYGGLDAIRIPSSLVWRPDIVLYNK 121
The following BLAST results are available for this feature:
BLAST of TCONS_00007331-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACH106.613e-2339.36Neuronal acetylcholine receptor subunit alpha-10 O... [more]
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