TCONS_00007330-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007330-protein
Unique Name	TCONS_00007330-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	374

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007330-protein ID=TCONS_00007330-protein|Name=TCONS_00007330-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
XAGCSIDIRFFPFDYQKCPLQFGSWSYSSPELDLELTRNDIDLSFYQESS
QFWLIRTEAVRNSVKYSCCPHPLTDITFTIVLKRKAGFHMFNVIVPSLVL
TFYALFIFAFPEETGERMGLAMDCFLTISILMMMVSDMMPIDSNVTPLLG
AFMLVSMLSITFSIFMNAVCFNMHRSVAVPNWLHHIIFNRILPLTVFKSC
LNSIRKSGNCSKYACCEGVFAASIRRKQSSTTRYFEEMDRLEELKKYAAK
FTPAHAYEANTVLDTNSLDEEFVETYEFIQMYFPKPLSNDEAVGGNDGNP
PTDAPSFKSQNERDKENVETLLENVYGEEESEYILDFWRCVAQTTDRVCL
IFVSVLYASISIGLMYQVPSVSFT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004109	XLOC_004109	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007330	TCONS_00007330	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006029	Neurotrans-gated_channel_TM
IPR006202	Neur_chan_lig-bd
IPR018000	Neurotransmitter_ion_chnl_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006811	ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005230	extracellular ligand-gated ion channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006811	ion transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005230	extracellular ligand-gated ion channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	PFAM	PF02932	Neur_chan_memb	coord: 93..364 e-value: 1.5E-18 score: 67.6
IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	SUPERFAMILY	90112	Neurotransmitter-gated ion-channel transmembrane pore	coord: 242..371 coord: 87..202
None	No IPR available	GENE3D	1.20.58.390		coord: 93..373 e-value: 3.6E-26 score: 91.1
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	PFAM	PF02931	Neur_chan_LBD	coord: 3..85 e-value: 2.1E-19 score: 69.7
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	GENE3D	2.70.170.10		coord: 1..92 e-value: 5.0E-26 score: 91.0
IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	SUPERFAMILY	63712	Nicotinic receptor ligand binding domain-like	coord: 3..85
IPR018000	Neurotransmitter-gated ion-channel, conserved site	PROSITE	PS00236	NEUROTR_ION_CHANNEL	coord: 4..18

Blast

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BLAST of TCONS_00007330-protein vs. Swiss-Prot (Human)
Match: ACHA3 (Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4)

HSP 1 Score: 151.754 bits (382), Expect = 1.974e-41
Identity = 93/383 (24.28%), Postives = 185/383 (48.30%), Query Frame = 0

Query:    2 AGCSIDIRFFPFDYQKCPLQFGSWSYSSPELDLELTRNDIDLSFYQESSQFWLIRTEAVRNSVKYSCCPHPLTDITFTIVLKRKAGFHMFNVIVPSLVLTFYALFIFAFPEETGERMGLAMDCFLTISILMMMVSDMMPIDSNVTPLLGAFMLVSMLSITFSIFMNAVCFNMHRSV----AVPNWLHHIIFNRILPLTVFKSCLNSIRKSGNCSKYACCEGVFAASIRRKQSSTTRYFEE------------MDRLEELKKYAAKFTPAHAYEA-NTVLDTNSLDEEFVETYEFIQMYFPKPLSNDEAVGGNDGNPPTDAPSFKSQNERDKENVETLLENVYGEEESEYILDFWRCVAQTTDRVCLIFVSVLYASISIGLMYQ 367
            + C ID+ +FPFDYQ C ++FGSWSY   ++DL L  + ++L  Y ES ++ +I+    ++ +KY+CC     DIT+++ ++R   F+  N+I+P L+++F  + +F  P + GE++ L +   L++++ ++++++ +P  S V PL+G ++L +M+ +T SI +     N+H        +P+W+  +  N +LP  +F +   S    GN  K     G   +++     + ++  +E              R  ++  ++A  T + + E+ + VL  ++L  E  E                                         ++V+ + EN+  + E++ I D W+ VA   DR+ L   +++    + GL  Q
Sbjct:  157 SSCKIDVTYFPFDYQNCTMKFGSWSYDKAKIDLVLIGSSMNLKDYWESGEWAIIKAPGYKHDIKYNCCEEIYPDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHYRTPTTHTMPSWVKTVFLN-LLPRVMFMTRPTS--NEGNAQKPRPLYGAELSNLNCFSRAESKGCKEGYPCQDGMCGYCHHRRIKISNFSANLTRSSSSESVDAVLSLSALSPEIKEAI---------------------------------------QSVKYIAENMKAQNEAKEIQDDWKYVAMVIDRIFLWVFTLVCILGTAGLFLQ 497

The following BLAST results are available for this feature:

BLAST of TCONS_00007330-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007330-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACHA3	1.974e-41	24.28	Neuronal acetylcholine receptor subunit alpha-3 OS...	[more]

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TCONS_00007330-protein (polypeptide) - C. hemisphaerica