TCONS_00007269-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007269-protein
Unique NameTCONS_00007269-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1324

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007269-protein ID=TCONS_00007269-protein|Name=TCONS_00007269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1324bp
MDNNQNFRPRLPQIPNAAALLNGATPGIYPQAGFLNTPILQQGLQYVPPI
GNPFLQISQPGIMSNGLRQPGLPVYSSFAAQRPLTPQLPYLTNSYLTGLV
NAPSLQNPEPTNLITPAAAANAIIEKFQEQRKAAEAPKRPPAIPRPPSTA
APAVGPLPPLPREDHALGRYENISPPGSPRPADPRKHRQTEDTLYELSXA
IIEKFQEQRKAAEAPKRPPAIPRPPSTAAPAVGPLPPLPREDHALGRYEN
ISPPDSPRPADPRKHRQTEDTLYELSLTTSQSNTHNNPLISPGNHRTSFF
PYTTNSVGSPKRKPKRVEFYGTHHKRRRSLVDDGLQHMTNRREDLIGENT
LSAAKKKKKRKNGRRSRSTDGRSTVGKPSDDIYYLKAGNLRESAEAKPDL
IKLHEEFEQFKKGLKRSTERDQIDPNIHFNKEEIAEQCSCPTSRKNRGIH
HKKYPGGQKYIEPCKKLTNNAKKLFLYHVNIDNPQNFSTRRPTTVYYDGR
DFEFNGFFVFSHVSLEKLPPYSFKRNFYQYEVTLESVKQEKFPENFCIKD
LDLVEEYFFKDIFELKDWDYQEKCGCQMLHFMPKFIHREMTPNNKEKISY
LPMAQLLLHLMESYLPVNEAQDDDSDIDDFSRIHKGALVYNPTKKPYALR
IDNIMFVKDGVNSKASASEFVHVSTSLGTEEVSLKDFKSVTEDLNRLKKS
LKGRAVPTRADKERLYNLQQKLNEMREIRSAFRFNDVRISTNNYYHTGLR
WDVFQHSSYLNGLWKHVKFISCLHVLEDTLKYNFKDHTLLQLALTLPSYQ
DHSSMSHCTTTSIHNLGKKRPDFNPKAAQSGIRKRGLMNLATVMITLGGE
QEDDQTKFKCQHNERLEFLGDALLDYVTSLHLFLMFPDKGAGKLTQFRMG
IVQTESLYQIAKRINVEDFILLSHYRLGMVNPTFEKNFEHTLANVVEAVI
GAVYLDGGLNSVDKLLSHLLFNDEPELANVWKNSTKHPLQIENPDGDREM
IPKHKVLQEMCELEKNMEFQFKNIRLLARAFTLHPQGLKDPTLTGGDYNR
LEFLGDAILKYVCSDYLYKEFPHHQEGHLTLLRISLINAKCLTLASMDLG
LPNYIIYESSRTAKNIKTKVYSDVFEALLGAVHIDRNPKGIQYCYKIIEV
SILSRLNEFIINQEWLDPKSQLQQCCLSLRRLDDVGEDYPIYTKQNEHNE
SGIHIFEVSVSFKGKQLGEGTGRSLKEAEKDAAKDALKKNHFEQHARQKR
MIYKKFGPARTTTDTEKVEEGGEPSTPKQESECKVAELKTDQDTKESAQS
VTKEETAKPPVPKNNVTIIAIDSD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004084XLOC_004084Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007269TCONS_00007269Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000999RNase_III_dom
IPR014720dsRBD_dom
IPR011907RNase_III
Vocabulary: Molecular Function
TermDefinition
GO:0004525ribonuclease III activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0016075rRNA catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006396 RNA processing
biological_process GO:0016075 rRNA catabolic process
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainSMARTSM00535riboneu5coord: 788..979
e-value: 2.1E-29
score: 113.7
coord: 1025..1161
e-value: 3.3E-31
score: 119.7
IPR000999Ribonuclease III domainPFAMPF14622Ribonucleas_3_3coord: 860..971
e-value: 6.3E-20
score: 71.6
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 770..983
e-value: 2.2E-37
score: 127.5
coord: 1007..1165
e-value: 5.8E-34
score: 116.3
IPR000999Ribonuclease III domainPFAMPF00636Ribonuclease_3coord: 1050..1136
e-value: 5.2E-19
score: 68.7
IPR000999Ribonuclease III domainPROSITEPS00517RNASE_3_1coord: 864..872
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 861..958
score: 29.489
IPR000999Ribonuclease III domainPROSITEPS50142RNASE_3_2coord: 1010..1137
score: 31.369
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 1025..1160
e-value: 1.2868E-33
score: 126.959
IPR000999Ribonuclease III domainCDDcd00593RIBOccoord: 861..973
e-value: 6.36755E-34
score: 127.729
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 855..972
coord: 772..799
IPR000999Ribonuclease III domainSUPERFAMILY69065RNase III domain-likecoord: 1009..1162
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 1168..1241
e-value: 5.4E-9
score: 45.9
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 1168..1239
e-value: 1.4E-13
score: 51.2
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 1167..1242
score: 12.33
NoneNo IPR availableGENE3D3.30.160.20coord: 1166..1257
e-value: 1.6E-14
score: 53.4
NoneNo IPR availableCDDcd00048DSRMcoord: 1167..1239
e-value: 2.3717E-13
score: 66.5271
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 1165..1250
IPR011907Ribonuclease IIIHAMAPMF_00104RNase_IIIcoord: 1013..1237
score: 21.43

Blast
[Close]
BLAST of TCONS_00007269-protein vs. Swiss-Prot (Human)
Match: RNC (Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2)

HSP 1 Score: 520.776 bits (1340), Expect = 1.403e-161
Identity = 306/858 (35.66%), Postives = 479/858 (55.83%), Query Frame = 0 
Query:  438 CSCPTSRKNRGIHHKKYPGGQKYIEPCKKLTNNAKKLFLYHVNIDNPQNFSTRRPTTVYYDGRDFEFNGFFVFSHVSLEKLPPYSFKRNFYQYEVTLESVKQEKFPENFCIKDLDLVEEYFFKDIFELKDWDYQEKC------GCQMLHFMPKFIHREMTPNNKEKISYLPMAQLLLHLM---ESYLP----VNEAQDDDSDIDDFSRIHKGALVYNPTKKPYALRIDNIMFVKDGVNSKASASEFVHVSTSLGTEEVSLK---DFKSVTEDLNRLKKSLKGRAVPTRADKERLYNLQQKLNEMREIRSAFRFNDVRISTNNYYHTGLRWDVFQHSSYLNGLWKHVKFISCLHVLEDTLKYNFKDHTLLQLALTLPSYQDHSSMS-HCTTTSIHNLGKKRPDF-NPKAAQSGIRKRGLMNLATVMITLGGEQEDDQTKFKCQHNERLEFLGDALLDYVTSLHLFLMFPDKGAGKLTQFRMGIVQTESLYQIAKRINVEDFILLSHYRLGMVNPTF--EKNFEHTLANVVEAVIGAVYLDGGLNSVDKLLSHLLFNDEPELANVWKNSTKHPLQIENPDGDREMIPKHKVLQEMCELEKNMEFQFKNIRLLARAFTLHPQGLKDPTLTGGDYNRLEFLGDAILKYVCSDYLYKEFPHHQEGHLTLLRISLINAKCLTLASMDLGLPNYIIY-ESSRTAKNIKTKVYSDVFEALLGAVHIDRNPKGIQYCYKIIEVSILSRLNEFIINQEWLDPKSQLQQCCLSLRRLDDVGEDYPIYTKQNEHNESGIHIFEVSVSFKGKQLGEGTGRSLKEAEKDAAKDALKKNHFEQHARQKRMIYKKFGPARTTTDTEKVEEGGEP 1274
            C C    +  GI H  YPG ++ I+PC+ +TNNA +LF Y + +  P NF T RPT + YD  ++ F GF +F+H  L  +P     R  +  + T+  + +E  PENFC+K L+L   + F+DI EL DW+ +          C   HFMP+F+ R +    KE +S   M Q+LL+L+   ++ +P     N  Q ++ +   ++   KG +V NP  KP ++RID +   ++  N        + V   +   ++S      ++ + +   +L+  L       + DK++L   ++ L ++R+  +  R   V +S+  ++ TG+R DV QH+  L  L  H+++  CL  L+  + Y F+D  LLQLA+T PS+  +  M+      S+ N G ++P + + K     +RK+G+  L  +M  LG   +DD T  +  HNERLEFLGDA+++++TS+HL+ +FP    G L  +R  IVQ + L  +AK++ ++ F+L +H       P    E +  H +AN  EA+IGAVYL+G L    +L   LLFND P+L  VW N   HPLQ++ P+ DR++I    VLQ++ E E+ +   F ++RLLARAFTL   G     LT G   R+EFLGD+I++ V ++YL+  FP H EGHLTLLR SL+N +     + +LG+  Y I  + ++    ++TK  +D+ E+ + A++ID   K ++Y +  + V    RL EFI+NQ+W DPKSQLQQCCL+L R +    D P+Y        S    + V+V FKG+++G G G S+++AE  AA DAL+K +F Q A QKR I +K+         E+  +  EP
Sbjct:  536 CKCSAKARRTGIRHSIYPG-EEAIKPCRPMTNNAGRLFHYRITVSPPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIR--FNIDYTIHFI-EEMMPENFCVKGLELFSLFLFRDILELYDWNLKGPLFEDSPPCCPRFHFMPRFV-RFLPDGGKEVLS---MHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVTNPGTKPSSVRIDQL--DREQFNPDVITFPII-VHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHIRYHQCLMHLDKLIGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLG---QDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYAH------GPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLFND-PDLREVWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNH--LTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVALRTKTLADLLESFIAALYID---KDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTL-RTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWEREHQEREP 1366
The following BLAST results are available for this feature:
BLAST of TCONS_00007269-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNC1.403e-16135.66Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2[more]
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