TCONS_00007245-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00007245-protein
Unique Name	TCONS_00007245-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1105

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00007245-protein ID=TCONS_00007245-protein|Name=TCONS_00007245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1105bp
MESKTAVRTQSLKRGQLHPNTPLEENPLSIEYFGNMLIRKQYYGLIERPN
TSTDEENNPLARKQSRFRVEPSNGVSDDDNNQLIVRSPSLAKLENPEFQT
RWYFKFFLGTVHNNYAFLDNTKEPRALSVCLTDAENHGIQQYRAILWQKS
GCRRICFPSIPNKTFNPREVLSYFGMEKIEKHPREIIAPEVQKELLVLEE
QEGSVNFKFGVIYAKKGQRTDDEMFGNVKGSDEFVRFLNVLGDTIDLKGW
TGYRGGLDVKDNMTGVHSVYTMYEGHEVMFHVSVMLPYSKDTQQVERKRH
IGNDIAVIVFVDGEPDEELSFKPSSVRTKFTHVFAVIRYSKRTQSYYLTV
FTEENVPAYGPPIPLPAKFTNPQEFRSFLITKLMNGEKAAYVSPVFSNKR
QRTLESLISGLQNDQWLKPEKFGLKRAVSHAVTNRENKRAFLELGQTLKV
NKIMQGAAPTSVNNVGGLLALKNTPWEPHAVLSNLNRPIICGDNIGNKLL
VSCDVGIYLVSEHGARLVFDRSMTACQLSVVEDYGFIMVRIRKHGRIYVL
PLSLLTEDRQVPFCRRDCAQFYLKKSKGSHLFSHSRQESPYLVVAIAVGK
RLSIYKWAQNGFKKHTDFVVTETPITLTIIHDAKDKLLLCVGLRHRFDIV
NVQTKQVTLLKNIVTYRKPKIVSALDIFDEDNPELLLTYSHSSVFVRLRD
NITEIVSFFWNNAPKDIVCAFPYILGFSENSIEIRLMVNGNLVHTHCVPH
MKLITAKNDIYFTSSLFSSTPTTIRRRSNAQQIGQTFMKIGLSDLAGLNR
IQEETVDDIHEIMLRRNIGVSDHHYASNRSLNKLNKLKGANQSDTGPLHV
RAYSASGAFCSPVINVRHNKVDITPVHEVNTPPRQSTVDARKQTPSQPTS
LESRKSPPTFKPNRTQISPEPQRVPDPDTHPDTSPTTRKSAPAVAPKPTK
RIVKSHSSASMEVNRNELKNLYCKQTTVQVLRKDEEERASSLPTSPNKVI
FMPKQDMFYSPSQKGARDAKKRSSLNRSNQHLEQVGARHLRNSASIRSLP
EASNEQLPHGAPREERQPRVNSTTYETHFGATNSNTWDVALTKHKPLTRH
KSTMV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_004071	XLOC_004071	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00007245	TCONS_00007245	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001180	CNH_dom
IPR000331	Rap_GAP_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0051056	regulation of small GTPase mediated signal transduction

Vocabulary: **Molecular Function**
Term	Definition
GO:0005096	GTPase activator activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051056	regulation of small GTPase mediated signal transduction
molecular_function	GO:0005096	GTPase activator activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001180	Citron homology (CNH) domain	SMART	SM00036	nik_2	coord: 486..766 e-value: 3.6E-5 score: 10.8
IPR001180	Citron homology (CNH) domain	PFAM	PF00780	CNH	coord: 491..755 e-value: 7.1E-41 score: 140.5
IPR001180	Citron homology (CNH) domain	PROSITE	PS50219	CNH	coord: 486..761 score: 19.234
IPR000331	Rap GTPase activating protein domain	PFAM	PF02145	Rap_GAP	coord: 224..403 e-value: 2.0E-57 score: 193.7
IPR000331	Rap GTPase activating protein domain	PROSITE	PS50085	RAPGAP	coord: 195..411 score: 59.78
IPR000331	Rap GTPase activating protein domain	SUPERFAMILY	111347	Rap/Ran-GAP	coord: 93..414
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1009..1069
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 874..961
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..81

Blast

[Close]

BLAST of TCONS_00007245-protein vs. Swiss-Prot (Human)
Match: GARL3 (GTPase-activating Rap/Ran-GAP domain-like protein 3 OS=Homo sapiens GN=GARNL3 PE=2 SV=2)

HSP 1 Score: 623.239 bits (1606), Expect = 0.000e+0
Identity = 336/779 (43.13%), Postives = 473/779 (60.72%), Query Frame = 0

Query:   40 KQYYGLIERPNTSTDEENNPLARKQSRFRVEPSNGVSDDDNNQLIVRSPSLAK-----LENPEFQTRWYFKFFLGTVHNNYAFLDNTKEPRALSVCLTDAENHGIQQYRAILWQKSGCRRICFPSIPNKTFNPREVLSYFGMEKIEKHPREIIAPEVQKELLVLEEQEGSVNFKFGVIYAKKGQRTDDEMFGNVKGSDEFVRFLNVLGDTIDLKGWTGYRGGLDVKDNMTGVHSVYTMYEGHEVMFHVSVMLPYSKDT-QQVERKRHIGNDIAVIVFVDGEPDEELSFKPSSVRTKFTHVFAVIRYSKRTQSYYLTVFTEENVPAYGPPIPLPAKFTNPQEFRSFLITKLMNGEKAAYVSPVFSNKRQRTLESLISGLQNDQWLKPEKFGLKRAVSHAVTNRENKRA----------FLELGQTLKVNKIMQGAAPTSVNNVGGLLALKNTPWEPHAVLSNLNRPIICGDNIGNKLLVSCDVGIYLVSEHGARL-VFDRSMTACQLSVVEDYGFIMVRIR--KHGRIYVLPLSLLT---EDRQVPFCRRDCAQFYLKKSKGSHLFSHSRQESPYLVVAIAVGKRLSIYKWAQNG--------------------FKKHTDFVVTETPITLTIIHDAKDKL--LLCVGLRHRFDIVNVQTKQVTLLKNIVTYRKPKIVSALDIFDEDNPELLLTYSHSSVFVR---------LRDNITEIVSFFWNNAPKDIVCAFPYILGFSENSIEIRLMVNGNLVHTHCVPHMKLITAKNDIYFTSS 765
            +++YG +E   +S   + +   ++  RFRVE  NG SD++   L    P   +     LENPE+ TRWYFK+FLG VH NY   D  K P  LSV L+D  N  + QYRAILW+K+G ++IC P  P KT + + +LS   ++K EK PREI  PE+QK+LLVLEEQEGSVNFKFGV++AK GQ TDDEMF N  GS+ F +FLN+LGDTI LKGWTGYRGGLD K++ TG+HSVYT+Y+GHE+MFHVS MLPYSK+  QQVERKRHIGNDI  IVF +GE +   +FKPS +R+ FTH+FA++RY+++  +Y L +F+EE+VP +GPP+P P  FT+ QEFR FL+ KL+NGEKA   +P F+ KR+RTL+ LI  L  D      K  L R     V     K A          F+ +GQ LK+  I++G AP+S+   G     K  PWEP    SN     +C D  G  LLVS D G+ LV +    + VFDR++   Q+ V+E    +++R    K  R++V  LS L    E +Q    R DC +  L+K+KG HL++ +   S  L + +A+  +L +     N                     F+   +  ++++P+ +T++    ++   L+CV  RH+FD+VN  T +   L ++   R    V+A+D++++    LLL Y++S ++ +         L         F WN AP  IVCAFPY+L F+ +S+EIRL+VNGNLVHT  VP ++L+ +++DIYFT++
Sbjct:   40 RKHYGSVELLISS---DADGAIQRAGRFRVE--NGSSDENATAL----PGTWRRTDVHLENPEYHTRWYFKYFLGQVHQNYIGNDAEKSPFFLSVTLSDQNNQRVPQYRAILWRKTGTQKICLPYSPTKTLSVKSILSAMNLDKFEKGPREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEPFQKFLNLLGDTITLKGWTGYRGGLDTKNDTTGIHSVYTVYQGHEIMFHVSTMLPYSKENKQQVERKRHIGNDIVTIVFQEGE-ESSPAFKPSMIRSHFTHIFALVRYNQQNDNYRLKIFSEESVPLFGPPLPTPPVFTDHQEFRDFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLHQDLMPDLHKNMLNRRSFSDVLPESPKSARKKEEARQAEFVRIGQALKLKSIVRGDAPSSLAASG---ICKKEPWEPQCFCSNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPSVPVFDRTLPVKQMHVLETLDLLVLRADKGKDARLFVFRLSALQKGLEGKQAGKSRSDCRENKLEKTKGCHLYAINTHHSRELRIVVAIRNKLLLITRKHNKPSGVTSTSLLSPLSESPVEEFQYIREICLSDSPMVMTLVDGPAEESDNLICVAYRHQFDVVNESTGEAFRLHHVEANRV-NFVAAIDVYEDGEAGLLLCYNYSCIYKKVCPFNGGSFLVQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEIRLVVNGNLVHTAVVPQLQLVASRSDIYFTAT 804

The following BLAST results are available for this feature:

BLAST of TCONS_00007245-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00007245-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GARL3	0.000e+0	43.13	GTPase-activating Rap/Ran-GAP domain-like protein ...	[more]

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TCONS_00007245-protein (polypeptide) - C. hemisphaerica