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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00007200-protein ID=TCONS_00007200-protein|Name=TCONS_00007200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MNSQQPCCSVCNEIFDDEEKMVNSNGQLYHENCFVCAQCFRPFEDGVFYE
FDGRQYCEYDFQQLYAPCCRGCGEYIIGRVIKAMGGNWHPECFRCEICDD
ILADAGFVKNAGRALCKRCNANEKSKGGRFMCHKCHTYIEEGKHIIYMGD
PVHPWHYNCYECGRELDETCRKRNNELYCLRCHDKLGIPICGACKKPIED
ERVVNAIGKQWHVDHFCCAKCEKPFYGNRHYEKNGLAYCETHFNQLFGDI
CFICNRAITRDVVTALNKCFCVHHFICTGCNTKLTLKSKFHEIDMKPLCL
RCHERLPKELRKRLRKAESANR Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001781 | Zinc finger, LIM-type | SMART | SM00132 | lim_4 | coord: 68..119
e-value: 2.2E-15
score: 67.1
coord: 7..60
e-value: 1.9E-15
score: 67.3
coord: 190..242
e-value: 2.6E-17
score: 73.5
coord: 250..302
e-value: 2.8E-12
score: 56.8
coord: 131..182
e-value: 1.6E-4
score: 31.0 |
| IPR001781 | Zinc finger, LIM-type | PFAM | PF00412 | LIM | coord: 251..305
e-value: 2.1E-7
score: 30.9
coord: 8..63
e-value: 2.5E-14
score: 53.1
coord: 191..246
e-value: 2.6E-14
score: 53.1
coord: 69..122
e-value: 1.4E-12
score: 47.6
coord: 132..184
e-value: 5.4E-5
score: 23.2 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 8..43 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 69..102 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS00478 | LIM_DOMAIN_1 | coord: 191..225 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 250..309
score: 7.336 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 189..249
score: 13.543 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 6..67
score: 13.731 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 130..188
score: 7.643 |
| IPR001781 | Zinc finger, LIM-type | PROSITE | PS50023 | LIM_DOMAIN_2 | coord: 69..126
score: 10.593 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 187..247
e-value: 1.4E-22
score: 79.0 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 248..322
e-value: 1.5E-12
score: 47.1 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 1..62
e-value: 3.7E-17
score: 61.5 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 129..186
e-value: 6.0E-9
score: 35.4 |
| None | No IPR available | GENE3D | 2.10.110.10 | | coord: 63..128
e-value: 1.1E-17
score: 63.2 |
| None | No IPR available | CDD | cd09334 | LIM4_PINCH | coord: 189..243
e-value: 9.52022E-23
score: 88.1808 |
| None | No IPR available | CDD | cd09331 | LIM1_PINCH | coord: 8..66
e-value: 2.35566E-28
score: 103.952 |
| None | No IPR available | CDD | cd09333 | LIM3_PINCH | coord: 132..183
e-value: 3.5679E-20
score: 80.8801 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 218..281 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 36..99 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 159..221 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 94..124 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 127..157 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 6..33 |
| IPR017351 | LIM and senescent cell antigen-like-containing domain protein 1 | PIRSF | PIRSF038003 | PINCH | coord: 1..322
e-value: 1.1E-146
score: 486.4 |
Blast
BLAST of TCONS_00007200-protein vs. Swiss-Prot (Human)
Match: LIMS1 (LIM and senescent cell antigen-like-containing domain protein 1 OS=Homo sapiens GN=LIMS1 PE=1 SV=4) HSP 1 Score: 408.297 bits (1048), Expect = 1.053e-143 Identity = 194/301 (64.45%), Postives = 242/301 (80.40%), Query Frame = 0
Query: 8 CSVCNEIFDDEEKMVNSNGQLYHENCFVCAQCFRPFEDGVFYEFDGRQYCEYDFQQLYAPCCRGCGEYIIGRVIKAMGGNWHPECFRCEICDDILADAGFVKNAGRALCKRCNANEKSKG-GRFMCHKCHTYIEEGKHIIYMGDPVHPWHYNCYECGRELDETCRKRNNELYCLRCHDKLGIPICGACKKPIEDERVVNAIGKQWHVDHFCCAKCEKPFYGNRHYEKNGLAYCETHFNQLFGDICFICNRAITRDVVTALNKCFCVHHFICTGCNTKLTLKSKFHEIDMKPLCLRCHERLP 307
C C F EK+VNSNG+LYHE CFVCAQCF+ F +G+FYEF+GR+YCE+DFQ L+APCC CGE+IIGRVIKAM +WHPECFRC++C ++LAD GFVKNAGR LC+ C+ EK++G G+++C KCH I+E + +I+ DP HP H+NC CG+EL R+ ELYCL CHDK+G+PICGAC++PIE RVVNA+GKQWHV+HF CAKCEKPF G+RHYE+ GLAYCETH+NQLFGD+CF CNR I DVV+ALNK +CV+ F C+ CNTKLTLK+KF E DMKP+C +C+E+ P
Sbjct: 10 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDE-QPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEG-RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFP 308
The following BLAST results are available for this feature:
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