TCONS_00007165-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007165-protein
Unique NameTCONS_00007165-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007165-protein ID=TCONS_00007165-protein|Name=TCONS_00007165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
MAQLSSLAPYGCYNAPTPLSYPHQFAPSPLTPTPPATPDCGLLSPISSNN
EMDMARRSLHLSPLTGPISPTGPPPGYTPADYGMDNVLMDPRWATMNQYL
GDSREIMELERRAQMQITSNDPTYTWSGQLPARNYKNPIYSNKIFLGGVP
WDITEAGLQQAFRPFGPVKVEWPIKEVKSDRNTPKGRGYCYLLFENEKSV
KALLANCTHDFSSGGDWYFKISSRRMRCKEVQVIPWVLTDSNFVRISSQK
LDPNRTIFVGGLHGMMNAESLCQIMNDLFDNVIYAGIDTDKHKYPIGSGR
VTFSSHRSFMKAVQAAFIEIRTTKFTKKVQIDPYLEDSMCSTCHINPGPF
FCRDPICFKYFCHSCWNWHHSLDQLRVHKPMTRHSKTGGMQSTWSNYPGE
ISILYMGRN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004020XLOC_004020Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007165TCONS_00007165Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR032296CEBP_ZZ
IPR034977CPEB1_RRM1
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 256..328
e-value: 0.23
score: 12.2
coord: 143..220
e-value: 2.6E-9
score: 46.9
IPR000504RNA recognition motif domainPFAMPF16367RRM_7coord: 141..235
e-value: 3.8E-32
score: 110.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 142..233
score: 11.145
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 255..336
score: 8.535
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 140..315
NoneNo IPR availableGENE3D3.30.70.330coord: 135..234
e-value: 2.2E-13
score: 49.8
NoneNo IPR availableGENE3D3.30.70.330coord: 244..331
e-value: 1.7E-5
score: 24.4
NoneNo IPR availableCDDcd12725RRM2_CPEB1coord: 252..337
e-value: 4.39915E-61
score: 193.38
IPR032296Cytoplasmic polyadenylation element-binding protein, ZZ domainPFAMPF16366CEBP_ZZcoord: 327..383
e-value: 9.3E-23
score: 80.1
IPR034977CPEB-1, RNA recognition motif 1CDDcd12723RRM1_CPEB1coord: 140..241
e-value: 2.27241E-63
score: 199.944

Blast
[Close]
BLAST of TCONS_00007165-protein vs. Swiss-Prot (Human)
Match: CPEB1 (Cytoplasmic polyadenylation element-binding protein 1 OS=Homo sapiens GN=CPEB1 PE=1 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 2.682e-137
Identity = 193/287 (67.25%), Postives = 227/287 (79.09%), Query Frame = 0 
Query:  107 MELERRAQMQITS-NDPTYTWSGQLPARNYKNPIYSNKIFLGGVPWDITEAGLQQAFRPFGPVKVEWPIKEVKSDRNTPKG---RGYCYLLFENEKSVKALLANCTHD-FSSGG--DWYFKISSRRMRCKEVQVIPWVLTDSNFVRISSQKLDPNRTIFVGGLHGMMNAESLCQIMNDLFDNVIYAGIDTDKHKYPIGSGRVTFSSHRSFMKAVQAAFIEIRTTKFTKKVQIDPYLEDSMCSTCHINPGPFFCRDPICFKYFCHSCWNWHHSLDQLRVHKPMTRHSK 386
            +E E R   Q  + N+ T TWSGQLP RNYKNPIYS K+FLGGVPWDITEAGL   FR FG + VEWP K+ K  R  PKG   +GY YL+FE EKSV++LL  C+HD  S  G  ++YFK+SSRRMRCKEVQVIPWVL DSNFVR  SQ+LDP+RT+FVG LHGM+NAE+L  I+NDLF  V+YAGIDTDKHKYPIGSGRVTF++ RS++KAV AAF+EI+TTKFTKKVQIDPYLEDS+C  C   PGPFFCRD +CFKYFC SCW+W HS++ LR H P+ R+ K
Sbjct:  275 IEREARLHRQAAAVNEATCTWSGQLPPRNYKNPIYSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGNMPKGYVYLVFELEKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKHKYPIGSGRVTFNNQRSYLKAVSAAFVEIKTTKFTKKVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQK 561
The following BLAST results are available for this feature:
BLAST of TCONS_00007165-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPEB12.682e-13767.25Cytoplasmic polyadenylation element-binding protei... [more]
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