TCONS_00007070-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007070-protein
Unique NameTCONS_00007070-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007070-protein ID=TCONS_00007070-protein|Name=TCONS_00007070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MITTVIYLILLTISAQTSDVDQCGEPVNGGWGEWSAWSICSVTCDSQKQG
GFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPS
GECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGECPTTTT
TPEPTTTPEPTTTPLPTTTTPKPTTTTT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003956XLOC_003956Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007070TCONS_00007070Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 51..62
score: 42.71
coord: 129..140
score: 33.33
coord: 29..42
score: 53.76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..178
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 94..146
e-value: 2.9E-5
score: 33.5
coord: 31..89
e-value: 4.1E-5
score: 33.0
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 95..145
e-value: 1.6E-8
score: 34.6
coord: 32..82
e-value: 6.3E-8
score: 32.6
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 90..145
e-value: 7.0E-11
score: 41.8
coord: 27..86
e-value: 1.7E-12
score: 46.9
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 28..89
score: 11.358
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 91..146
score: 11.593
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 88..145
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 27..77

Blast
[Close]
BLAST of TCONS_00007070-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 6.326e-25
Identity = 54/121 (44.63%), Postives = 72/121 (59.50%), Query Frame = 0 
Query:   27 VNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGECPT 147
            V+GG+ +WSAW  CSVTC      G Q R R C+ P+   GG PC+G S+ ++  C  +  CPV+G+WSEW    EC+ SCG G  T  R C+NP  Q+ G  C+G AV++  CN   CP 
Sbjct: 4528 VHGGFSQWSAWRACSVTCGK----GIQKRSRLCNQPLPANGGKPCQG-SDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPV 4642

HSP 2 Score: 100.138 bits (248), Expect = 6.966e-25
Identity = 52/121 (42.98%), Postives = 69/121 (57.02%), Query Frame = 0 
Query:   26 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGECP 146
            PV+G W EWS W  C+ +C      G Q R R C+ P  ++GG PC+G + E +  CN    CPV+G WS W P G CSESCG G  T  R+C+NP   + G+ C G   +++ CN   CP
Sbjct: 4584 PVDGSWSEWSLWEECTRSCGR----GNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-CNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP 4698

HSP 3 Score: 99.3673 bits (246), Expect = 1.507e-24
Identity = 50/122 (40.98%), Postives = 68/122 (55.74%), Query Frame = 0 
Query:   26 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGECPT 147
            P++G W  W++WS CSV+C     GG + R R CS P+ +YGG  C+G   +  + CN+D  CP +GNWS W   G CS +C  G +   R CDNP     G  C GP  +++ CN   CP 
Sbjct: 4698 PIHGKWATWASWSACSVSCG----GGARQRTRGCSDPVPQYGGRKCEGSDVQSDF-CNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPV 4813

HSP 4 Score: 86.6557 bits (213), Expect = 4.388e-20
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 0 
Query:   26 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGECPT 147
            PV+G W  W  W  CS +C      G Q R R C+ P   +GG+ C G +E ++  CN +  CP++G W+ W     CS SCG G     R C +P  QY G +C+G  V+ + CN+  CPT
Sbjct: 4641 PVHGAWSAWQPWGTCSESCGK----GTQTRARLCNNPPPAFGGSYCDG-AETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPT 4756

HSP 5 Score: 84.7297 bits (208), Expect = 2.026e-19
Identity = 49/121 (40.50%), Postives = 60/121 (49.59%), Query Frame = 0 
Query:   26 PVNGGWGEWSAWSICSVTCDSQKQGGFQIRRRECSAPIAEYGGTPCKGESEEKLYGCNADVMCPVNGNWSEWIPSGECSESCGAGMITYIRMCDNPESQYCGTECQGPAVKVESCNNGECP 146
            P +G W  WS W  CS TC+    GG   R R C  P    GG  C G  + ++  CN D MCPV+G+W  W    +CS SCG G  T  R+CD+P     G  C G   +V  CN   CP
Sbjct: 4755 PTHGNWSPWSGWGTCSRTCN----GGQMRRYRTCDNPPPSNGGRACGG-PDSQIQRCNTD-MCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869
The following BLAST results are available for this feature:
BLAST of TCONS_00007070-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN16.326e-2544.63Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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