TCONS_00007061-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007061-protein
Unique NameTCONS_00007061-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007061-protein ID=TCONS_00007061-protein|Name=TCONS_00007061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MATIKEVKDLVQQKVEVERELDELHSALESHGSNMTDELVDPEGYPRADI
DVLTVRKTRVRIIYLQSDLKQLLGKIEKGLYKIHADEREKMKTGESAPPN
VNTTDQNAEPFLKIDLVSEGSPAEKAGLKLDDLIVRFGSLTCENYTGLQM
IGSLVQHSKEKNIEIAVKRNGKLSNLILTPSTWSGRGLLGCNIVLYKK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003948XLOC_003948Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007061TCONS_00007061Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..27
NoneNo IPR availableGENE3D2.30.42.10coord: 98..197
e-value: 3.8E-12
score: 45.7
NoneNo IPR availableCDDcd00989PDZ_metalloproteasecoord: 113..180
e-value: 1.29374E-10
score: 53.3916
IPR001478PDZ domainPFAMPF13180PDZ_2coord: 111..176
e-value: 4.2E-8
score: 33.3
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 107..183

Blast
[Close]
BLAST of TCONS_00007061-protein vs. Swiss-Prot (Human)
Match: PSMD9 (26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 1.182e-47
Identity = 80/203 (39.41%), Postives = 128/203 (63.05%), Query Frame = 0 
Query:    1 MATIKEVKDLVQQKVEVERELDELHSALESH-GSNMTDELVDPEGYPRADIDVLTVRKTRVRIIYLQSDLKQLLGKIEKGLYKIHADEREKMKTG------ESAPPNVNTTDQNAEP--FLKIDLVSEGSPAEKAGLKLDDLIVRFGSLTCENYTGLQMIGSLVQHSKEKNIEIAVKRNGKLSNLILTPSTWSGRGLLGCNIV 194
            + T+ +V++L+++K E+E ++   +  LES  G  M + LVD EGYPR+D+D+  VR  R  II LQ+D K ++ ++E+ L+++HA ++EK          E+    +  ++    P  F K++ +S GSPA  AGL++DD IV FGS+  +N+  L  IGS+VQHS+ K + + V R G+   L L P+ W+G+GLLGCNI+
Sbjct:   17 VVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNII 219
The following BLAST results are available for this feature:
BLAST of TCONS_00007061-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD91.182e-4739.4126S proteasome non-ATPase regulatory subunit 9 OS=... [more]
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