TCONS_00006933-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006933-protein
Unique NameTCONS_00006933-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006933-protein ID=TCONS_00006933-protein|Name=TCONS_00006933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MGGDQVILATAGYDHTIRFWQAHSGVCLRTVQHSDSQVNAMEVTPDRQLL
AAAGYQHIRMYDIPSGNANPVINYDGVSKNITAVGFQEKGKWMFTGGEDK
AVRIWDMRSRNLQCQHMFQVGAPVTSVVLHPNQTQLIVGDQSGAINMWDL
KTHHNEQLIPDTDAVIQSVAIGQDGKYMACINDKGTCLIWSLAGNKEERT
LFYPKQKIPAHKTYGLKCLFSPDSSLLATTSADGTLKLWKTKDFSLYKTL
GDSSQRWVWDCSFSEDSHYIITASSGNHGRLWNIDKSEAIREYIGHQKAV
ICLAFKDVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003879XLOC_003879Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006933TCONS_00006933Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 93..107
score: 32.01
coord: 227..241
score: 34.5
coord: 8..22
score: 30.73
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 201..240
e-value: 2.7E-4
score: 30.3
coord: 111..149
e-value: 0.0058
score: 25.8
coord: 24..62
e-value: 0.039
score: 23.1
coord: 67..106
e-value: 1.1E-4
score: 31.5
coord: 243..283
e-value: 0.027
score: 23.6
coord: 152..191
e-value: 4.7
score: 12.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 79..106
e-value: 1.6E-4
score: 22.3
coord: 113..149
e-value: 0.15
score: 12.8
coord: 26..62
e-value: 0.019
score: 15.7
coord: 208..240
e-value: 1.2E-4
score: 22.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 124..158
score: 8.871
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 208..249
score: 11.11
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..30
score: 9.071
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 74..115
score: 12.58
NoneNo IPR availableGENE3D1.10.10.670coord: 67..103
e-value: 4.1E-8
score: 32.5
coord: 151..205
e-value: 4.1E-8
score: 32.5
coord: 104..150
e-value: 1.3E-12
score: 47.0
coord: 4..66
e-value: 6.4E-14
score: 51.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 206..307
e-value: 6.3E-22
score: 77.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 93..107
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..309
score: 41.842
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 4..305

Blast
[Close]
BLAST of TCONS_00006933-protein vs. Swiss-Prot (Human)
Match: LST8 (Target of rapamycin complex subunit LST8 OS=Homo sapiens GN=MLST8 PE=1 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 6.121e-152
Identity = 200/315 (63.49%), Postives = 238/315 (75.56%), Query Frame = 0 
Query:    1 MGGDQVILATAGYDHTIRFWQAHSGVCLRTVQHSDSQVNAMEVTPDRQLLAAAGYQHIRMYDIPSGNANPVINYDGVSKNITAVGFQEKGKWMFTGGEDKAVRIWDMRSRNLQCQHMFQVGAPVTSVVLHPNQTQLIVGDQSGAINMWDLKTHHNEQLIPDTDAVIQSVAIGQDGKYMACINDKGTCLIWSLAGN-KEERTLFYPKQKIPAHKTYGLKCLFSPDSSLLATTSADGTLKLWKTKDFSLYKTL-------GDSSQRWVWDCSFSEDSHYIITASSGNHGRLWNIDKSEAIREYIGHQKAVICLAFKD 307
            +G D VILATAGYDHT+RFWQAHSG+C RTVQH DSQVNA+EVTPDR ++AAAGYQHIRMYD+ S N NP+I+YDGV+KNI +VGF E G+WM+TGGED   RIWD+RSRNLQCQ +FQV AP+  V LHPNQ +LIVGDQSGAI++WDLKT HNEQLIP+ +  I S  I  D  YMA +N  G C +W+L G   +E T   PK KIPAH  Y L+C FSPDS+LLAT SAD T K+W+T +FSL   L       G+SS+ W+W C+FS DS YI+TASS N  RLW ++  E  REY GHQKAV+CLAF D
Sbjct:    8 VGSDPVILATAGYDHTVRFWQAHSGICTRTVQHQDSQVNALEVTPDRSMIAAAGYQHIRMYDLNSNNPNPIISYDGVNKNIASVGFHEDGRWMYTGGEDCTARIWDLRSRNLQCQRIFQVNAPINCVCLHPNQAELIVGDQSGAIHIWDLKTDHNEQLIPEPEVSITSAHIDPDASYMAAVNSTGNCYVWNLTGGIGDEVTQLIPKTKIPAHTRYALQCRFSPDSTLLATCSADQTCKIWRTSNFSLMTELSIKSGNPGESSRGWMWGCAFSGDSQYIVTASSDNLARLWCVETGEIKREYGGHQKAVVCLAFND 322
The following BLAST results are available for this feature:
BLAST of TCONS_00006933-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LST86.121e-15263.49Target of rapamycin complex subunit LST8 OS=Homo s... [more]
back to top