TCONS_00006801-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006801-protein
Unique Name	TCONS_00006801-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	414

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006801-protein ID=TCONS_00006801-protein|Name=TCONS_00006801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
FSLDSDLISIGKFYTHFLQHTGALLKTSSTLSFKESNSEDSLLGRLGNGL
HGIIHRGNKKAQYSNSETLVDILRQHILQFTSKLHQLENSKRVEQEKYKE
IKFKLRHQLDRHQNEAALRREEETTLKERIFELEERMKSMVYTEQFDEVC
TDLKNALQREEDLQRLFGQQIKEIGHMGQRIEEHEICFDEKSHELSETYG
VLRKTQLELKRTAESLKETKQKFSKLKHERSHLQKNASEQETRLSAFLRD
REILARYMRHVTTVIHNTKKEMIQSPDMLYNVLSQLIAQQHGQDEKQSCN
EIDEKDVGAELKSPEMQLIENMVKVFLETHSASMVKFSVTLSEKDALQKQ
VHQLQDEVNLHKSHIRSLRERVTALFQQNISTDAKTLFMENPVTFGARHN
GENEEAIFIPLQEH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003802	XLOC_003802	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006801	TCONS_00006801	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 202..236
None	No IPR available	COILS	Coil	Coil	coord: 344..371

Blast

[Close]

BLAST of TCONS_00006801-protein vs. Swiss-Prot (Human)
Match: CC171 (Coiled-coil domain-containing protein 171 OS=Homo sapiens GN=CCDC171 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.429e-17
Identity = 93/406 (22.91%), Postives = 186/406 (45.81%), Query Frame = 0

Query:   25 LKTSSTLSFKESNSEDSLLGRLGNGLHGIIH-------RGNKKAQYSNSETLVDILRQHILQFTSKLHQLE---NSKRVEQEKYKEIKFKLRHQLDRHQNEAALRREEETTLKERIFELEERMKSMVYTEQFDEVCTDLKNALQREEDLQRLFGQQIKEIGHMGQRIEEHEICFDEKSHELSETYGVLRKTQLELKRTAESLKETKQKFSKLKHERSHLQKNASEQETRLSAFLRDREILARYMRHVTTVIHNTKKEMIQSPDMLY-NVLSQLIAQQHGQDEKQSCNEIDEKDVGAELKSPEMQLIENMVKVFLETHSASMVKFSVTLSEKDALQKQVHQLQDEVNLHKSHIRSLRERV-TALFQQNIST------DAKTLFMENPVTFGARHNGENEEAIFIPLQ 412
            L +S ++++ E   +DSL+ RL +GLH +         RG+     S +      L++ IL FT +LH  E    S R+E  ++K    +++ +LD+ Q            L+ ++ E   +   ++  E+F+  C +L NAL REE  Q L  +Q +++  +  ++E H     +K+  L E    L + ++EL+R  +SL++  +  ++L+ ++  L++N  + E+ L    +D+E +A +MR V   +H  + ++  S      N  +  + + H          ++   +      PE+   + M+K F++ +  +  +              +  L+ E+  H+SHI +L+  + TA  ++N S       D   L + +     A   G  +   F+PL+
Sbjct:  925 LHSSRSITYVE---KDSLVQRLAHGLHKVNTLALKYGLRGHVPITKSTAS-----LQKQILGFTQRLHAAEVERRSLRLEVTEFKRSVNEMKKELDKAQG-----------LQMQLNEF--KQSKLITHEKFESACEELNNALLREEQAQMLLNEQAQQLQELNYKLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIHDAESALRMAAKDKECVANHMRAVENTLHKVRDQISLSWSAASRNDFTLQLPKLH----------LETFAMEGLKGGPEVVACQAMIKSFMDVYQLASTR--------------IMTLEKEMTSHRSHIAALKSELHTACLRENASLQSIGSRDHSNLSIPSRAPLPADTTGIGD---FLPLK 1282

The following BLAST results are available for this feature:

BLAST of TCONS_00006801-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006801-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CC171	5.429e-17	22.91	Coiled-coil domain-containing protein 171 OS=Homo ...	[more]

You are here

TCONS_00006801-protein (polypeptide) - C. hemisphaerica