TCONS_00006602-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006602-protein
Unique Name	TCONS_00006602-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	589

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006602-protein ID=TCONS_00006602-protein|Name=TCONS_00006602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=589bp
MIQETLDFLYFQWIPIWEIFLATVEPHLPEHLHWNEICWSFVFYMNELRL
WIHRKTNGLENWEIVTNTMLYCFYAFLAFEVLRRIIPVVFFNDDGFFNML
KKKAFKVARRLPIVGPKIQEAIDDAMKQLEETAFSVGGNEYIKKLPYNGM
NKEEVLKEIDTYQNIGGCSWQDGYVSGAIYSDGELTELMTDVYSRYCWSN
PLHADVFPDVRKMEAECVRMVINMFNGDENCCGLMTSGGSESIMMAVKCY
RELARERGIEKPEIVAPYSVHPAFDKGCHYFGIKLTHVPVDKKTGKANTK
AMERAISKRTILIVGSVPSYPHGCIDDLVELSRIALKKNVYLHADACLGG
FIVAFMNKAGYDLPPFDFRLPGITSISCDTHKYGYTPKGSSVVMYRSKDI
RKHQYYTQPNWSGGVYAAASFPGSRPGNTIATTWATMMHLGEKGYVERTK
LIIKTANDIGKRVSKIPGLYLLANVDVCIVAFASNDFDIFLMSDDLAKKG
WHLNPLQFPSGLHIAVTLNHTKPGVADRFVNDIKGVAQRLMKNPGIKAEG
KGAIYGLSQQIPDRSIITDITTGFLDTYYSVTAGLKKME

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003730	XLOC_003730	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006602	TCONS_00006602	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002129	PyrdxlP-dep_de-COase
IPR015422	PyrdxlP-dep_Trfase_sub2
IPR015421	PyrdxlP-dep_Trfase_major_sub1
IPR015424	PyrdxlP-dep_Trfase

Vocabulary: **Molecular Function**
Term	Definition
GO:0016831	carboxy-lyase activity
GO:0030170	pyridoxal phosphate binding
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0019752	carboxylic acid metabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019752	carboxylic acid metabolic process
molecular_function	GO:0016831	carboxy-lyase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002129	Pyridoxal phosphate-dependent decarboxylase	PFAM	PF00282	Pyridoxal_deC	coord: 158..483 e-value: 4.3E-21 score: 75.0
IPR015422	Pyridoxal phosphate-dependent transferase, subdomain 2	GENE3D	3.90.1150.10		coord: 433..541 e-value: 3.6E-25 score: 88.1
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	GENE3D	3.40.640.10		coord: 182..432 e-value: 4.5E-43 score: 146.7
IPR015424	Pyridoxal phosphate-dependent transferase	SUPERFAMILY	53383	PLP-dependent transferases	coord: 138..544

Blast

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BLAST of TCONS_00006602-protein vs. Swiss-Prot (Human)
Match: SGPL1 (Sphingosine-1-phosphate lyase 1 OS=Homo sapiens GN=SGPL1 PE=1 SV=3)

HSP 1 Score: 490.345 bits (1261), Expect = 2.654e-168
Identity = 232/541 (42.88%), Postives = 347/541 (64.14%), Query Frame = 0

Query:   44 YMNELRLWIHRKTNGLENWEIVTNTMLYCFYAFLAFEVLRRIIPVVFFNDDGFFNMLKKKAFKVARRLPIVGPKIQEAIDDAMKQLEET-AFSVGGNEYIKKLPYNGMNKEEVLKEIDTYQNIGGCSWQDGYVSGAIYSDGE-LTELMTDVYSRYCWSNPLHADVFPDVRKMEAECVRMVINMFNGDENCCGLMTSGGSESIMMAVKCYRELARERGIEKPEIVAPYSVHPAFDKGCHYFGIKLTHVPVDKKTGKANTKAMERAISKRTILIVGSVPSYPHGCIDDLVELSRIALKKNVYLHADACLGGFIVAFMNKAGYDLP-PFDFRLPGITSISCDTHKYGYTPKGSSVVMYRSKDIRKHQYYTQPNWSGGVYAAASFPGSRPGNTIATTWATMMHLGEKGYVERTKLIIKTANDIGKRVSKIPGLYLLANVDVCIVAFASNDFDIFLMSDDLAKKGWHLNPLQFPSGLHIAVTLNHTKPGVADRFVNDIKGVAQRLMKNPGIKAEGKGAIYGLSQQIPDRSIITDITTGFLDTYYSV 581
            Y  + + +++      E W+++  ++++       +E +        F  +  ++  KKK FK+ R++PI+G KIQ+ ++     + +  +F     EY+K LP  G++   VL+++  Y ++    WQ+G  SG +YS  E LTEL+   Y  + WSNPLH D+FP +RK+EAE VR+  ++FNG  + CG +TSGG+ESI+MA K YR+LA E+GI+ PEIVAP S H AF+K   YFG+K+  VP+ K   + + +AM RAIS+ T ++V S P +PHG ID + E++++A+K  + LH DACLGGF++ FM KAGY L  PFDFR+ G+TSIS DTHKYGY PKGSS+V+Y  K  R +Q++   +W GG+YA+ +  GSRPG   A  WA +MH GE GYVE TK IIKTA  +   +  I G+++  N  + ++A  S DFDI+ +S+ +  KGW+LN LQFP  +H  +TL H +  VA +F+ DI+    ++MKNP  K  G GAIYG++Q   DR+++ ++++ FLD+ YS 
Sbjct:   22 YSTKAKNYVNGHCTKYEPWQLIAWSVVWTLLIVWGYEFV--------FQPESLWSRFKKKCFKLTRKMPIIGRKIQDKLNKTKDDISKNMSFLKVDKEYVKALPSQGLSSSAVLEKLKEYSSMDAF-WQEGRASGTVYSGEEKLTELLVKAYGDFAWSNPLHPDIFPGLRKIEAEIVRIACSLFNGGPDSCGCVTSGGTESILMACKAYRDLAFEKGIKTPEIVAPQSAHAAFNKAASYFGMKIVRVPLTKMM-EVDVRAMRRAISRNTAMLVCSTPQFPHGVIDPVPEVAKLAVKYKIPLHVDACLGGFLIVFMEKAGYPLEHPFDFRVKGVTSISADTHKYGYAPKGSSLVLYSDKKYRNYQFFVDTDWQGGIYASPTIAGSRPGGISAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKGIFVFGNPQLSVIALGSRDFDIYRLSNLMTAKGWNLNQLQFPPSIHFCITLLHARKRVAIQFLKDIRESVTQIMKNPKAKTTGMGAIYGMAQTTVDRNMVAELSSVFLDSLYST 552

The following BLAST results are available for this feature:

BLAST of TCONS_00006602-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006602-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SGPL1	2.654e-168	42.88	Sphingosine-1-phosphate lyase 1 OS=Homo sapiens GN...	[more]

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TCONS_00006602-protein (polypeptide) - C. hemisphaerica