TCONS_00006548-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006548-protein
Unique NameTCONS_00006548-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length101

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006548-protein ID=TCONS_00006548-protein|Name=TCONS_00006548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
MSSNPNFTNKERFQLEHSYISALLHNQIRFPIAMAGSRAASPKKTGKAMK
KRGRKPGTKTNKRRSKRRESYTMYIYKVLKQVHPDVGISSKSMSIMNSFV
X
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003706XLOC_003706Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006548TCONS_00006548Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000786 nucleosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0046982 protein heterodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 90..101
score: 42.13
coord: 71..89
score: 78.1
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 39..100
e-value: 1.4E-7
score: 31.8
NoneNo IPR availableGENE3D1.10.20.10coord: 34..101
e-value: 8.7E-20
score: 70.6
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 43..100

Blast
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BLAST of TCONS_00006548-protein vs. Swiss-Prot (Human)
Match: H2B1A (Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 5.289e-18
Identity = 40/66 (60.61%), Postives = 49/66 (74.24%), Query Frame = 0 
Query:   37 SRAASPKKTG--KAMKKRGRKPGTKTNKRRSKRRESYTMYIYKVLKQVHPDVGISSKSMSIMNSFV 100
            S+ A+  K G  KA+ K  +K G    KR+  R+ESY++YIYKVLKQVHPD GISSK+MSIMNSFV
Sbjct:    6 SKGATISKKGFKKAVVKTQKKEG---KKRKRTRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV 68
The following BLAST results are available for this feature:
BLAST of TCONS_00006548-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H2B1A5.289e-1860.61Histone H2B type 1-A OS=Homo sapiens GN=HIST1H2BA ... [more]
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