TCONS_00006474-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00006474-protein
Unique Name	TCONS_00006474-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	474

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00006474-protein ID=TCONS_00006474-protein|Name=TCONS_00006474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
MATGMAERHVAHILFFVFHCLLLAYAEEGRHTRFEYKQSFKGPHLVNKQG
NIPFWTYYGSAIPSDEQVRVTPSLKDQRGGLWAKTKTNAPFWEIEVFFKV
SGRGRVGGDGLAVWFTKDQGTTGPVFGSSDHWTGMGLFFDSFDNDGEQNN
PYVMVMLNDGTKTYDHFKDGSNQQLGGCMRDFRNRPHAIRAKVRYYNNVL
TVFYHNGMSEKSEDYELCMRAENVELPKEGFFGVTAATGGLADDHDVIKF
LTHSLTPPLSEEEKKKLISEDQRKKYEEQYGEFTHKLEEKKTEFQKEHPE
KQVQEEKFESVYERDIRLIYEGQNSMHQIMRGLHSKTGELTTEINNLHSA
VNQKTSGGGGSSDGPSRNDVNRLINLQNEVHTAIRDLQSRSGNTDDQRKL
ERVEQNIRTILENVVLLASKMNDKTNKQASQQNCPTVTCLSTGTFIFMMF
LQIALIVGYSMYQNYQQQQAKKFY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003679	XLOC_003679	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00006474	TCONS_00006474	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005052	Lectin_leg
IPR013320	ConA-like_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 393..413
None	No IPR available	COILS	Coil	Coil	coord: 259..293
None	No IPR available	GENE3D	2.60.120.200		coord: 30..264 e-value: 1.1E-52 score: 178.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 351..370
None	No IPR available	CDD	cd06902	lectin_ERGIC-53_ERGL	coord: 33..256 e-value: 3.78748E-153 score: 436.756
IPR005052	Legume-like lectin	PFAM	PF03388	Lectin_leg-like	coord: 33..255 e-value: 1.5E-84 score: 282.9
IPR005052	Legume-like lectin	PROSITE	PS51328	L_LECTIN_LIKE	coord: 32..255 score: 59.929
IPR013320	Concanavalin A-like lectin/glucanase domain	SUPERFAMILY	49899	Concanavalin A-like lectins/glucanases	coord: 31..256

Blast

[Close]

BLAST of TCONS_00006474-protein vs. Swiss-Prot (Human)
Match: LMAN1 (Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=2)

HSP 1 Score: 382.104 bits (980), Expect = 2.148e-128
Identity = 196/468 (41.88%), Postives = 293/468 (62.61%), Query Frame = 0

Query:   31 HTRFEYKQSFKGPHLVNKQGNIPFWTYYGSAIPSDEQVRVTPSLKDQRGGLWAKTKTNAPFWEIEVFFKVSGRGRVGGDGLAVWFTKDQGTTGPVFGSSDHWTGMGLFFDSFDNDGEQNNPYVMVMLNDGTKTYDHFKDGSNQQLGGCMRDFRNRPHAIRAKVRYYNNVLTVFYHNGMSEKSEDYELCMRAENVELPKEGFFGVTAATGGLADDHDVIKFLTHSLTPPLSEEE-KKKLISEDQRKKYEEQYGEFTHKLEEKKTEFQKEHPEKQVQ--EEKFESVYERDIRLIYEGQNSMH----QIMRGLHSKTGELTTEINNLHSAVNQKTSGGGGSSDGPSRNDVNRLINLQNEVHTAIRDLQ-----------------SRSGNTDDQRKLERVEQNIRTILENVVLLASKMNDKTNKQASQQNCPTVTCLSTGTFIFMMFLQIALIVGYSMYQNYQQQQAKKFY 474
            H RFEYK SFKGPHLV   G +PFW + G+AIPS +Q+RV PSLK QRG +W KTK     WE+EV F+V+GRGR+G DGLA+W+ ++QG  GPVFGS+D W G+G+FFDSFDNDG++NNP ++++ N+G   YDH  DG++Q L  C RDFRN+P+ +RAK+ YY N LTV  +NG +    DYE C + EN+ +P +G FG++AATGGLADDHDV+ FLT  LT P  E     K ISE +++KY+E++  F  +L++KK EFQK HP+ Q Q  EE FESV +R++R ++EGQN +H    Q+ R L     E    +++L   ++++ +G  G     ++ +++ ++  Q+E+   + +++                 S  G  +  +    +++++  +  ++  L  +      K    +  P  +CLST  FI  + +Q  L +GY MY++ Q+  AKKF+
Sbjct:   43 HRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEILRQVNEMKNSMSETVRLVSGMQHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCPELPPFPSCLSTVHFIIFVVVQTVLFIGYIMYRSQQEAAAKKFF 510

The following BLAST results are available for this feature:

BLAST of TCONS_00006474-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00006474-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LMAN1	2.148e-128	41.88	Protein ERGIC-53 OS=Homo sapiens GN=LMAN1 PE=1 SV=...	[more]

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TCONS_00006474-protein (polypeptide) - C. hemisphaerica