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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00006452-protein ID=TCONS_00006452-protein|Name=TCONS_00006452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=4568bp
NGSQSPIQISDDEDEMSYNEKTHGEYHFSIDTTNVEEDTPKPQPELEEST
DAQQPSTSKSPEKKDETKRRTFNLSGLKQRMGGKIDQQMLIKNKEISKRK
AYELITKTSTSEPSDSMEQAPSEPEIDNSVYENQLFDITSNFQRQPSKEI
VKSPPPKRTKTAMRPQSLKESRRERLEKELSSPAVLKASSSKKPAAKSTS
SIIKPTPKLPETTSKHKYTLDLFHNSILIWDPVNLEQGRDELEISTSLQS
VPVAGGYNSFDEYMKINWPLMLLETWAQLRKEWDEISANRNSRKAWRVES
VEEQPNPKASLITCSWFDVVSKESSQSHTCGIHESDLVILYFNDGQCKYF
GIVDSVQRRYHSKRRRKAYQLSVLTCKDEKIKHFKRVEVLRVTTLTTYIR
QWNALIRFQNSLLCKDILKPFRPQTYCHKSDALIQRTDRLMKLNQDQFQA
VSSAVKAVHTPYSIPKICLIQGPPGTGKSYTIKTIITHLMQTLALAEKKN
SSQDKESKARNAKERSRMLICAPSNAAVDEIVKRLLNSPPTMSKSTQSAA
KAPTSPQEKKKNCGDFNLLRVGYYAEPALRRYTLEYLVEQKMKTMKFQHN
PDAIQREIKKLNYILDDLDKTCVKLKLSPDPKEKRELYEKKREERTKMQQ
KQDDLMKQLASATEKFDFYQERKRYTQTLLFHADIICCTLSGAGSEWMVK
AFKDFQKRAAFNCVLVDEAGQCTEPDLLIPLQFGASKLILVGDQNQLPAT
VLSKKASRYNYGQSLFERIIYSLGEYRETCSDASRGERPAFLLTTQYRMT
KEICSYPSKRFYENKLRPAKQLASQKPWPLRPYIVLNIQGQELKTSDGSL
HNPLEREYVLALCQAITSRTSIKPGSIGIITPYKQQKHLLQQRFHQDESL
KPITVNTIDGYQGQEKEVIILSCVRGRNQNNTIGFLSHPQRMNVALTRAK
KTLVILANQSVQIDDDWKDLFANARERNLLFNVDQTESASKTVLREYSPS
EVQRANTLSQIQQANNQVRTVQFIENAPMPARPEDPRRSRDQADVVAGTD
VTADENVEHLNQTDITVDNQGLVARTDVTADENVEHLNQTDITDDNQGHV
TETDVTGDNTEDSQQTGVTDNKKDQIAQNVTETDGVKDGDRDQNVGHIDA
IHDCDSVYNAESVHQTDDIENEAGAQNLDSLSTSVHQTDDLNSGDTDEEH
CEEINSISVVNKDLDVMEDVNVEDQNENGGKTNTQQLCSCSNTTAASVQS
MITEENVERVKKILIKPKIINSNNQTISPDRPTSEEDVERVKKILVSPKI
MNPCKQTTSPDSPRSDVETFEFMRCPSVIQQSTSLELFTPRESIDRITVI
VPNPNSPESTGQESCSDQEKSSCSNEATTVDVEFEIGGLSPNIVHLTEDK
ETNVMCDGLDTSSGVDQTQQSRFGCNYPQTTSISTELESKSPRTVEKNGE
ESESDYLSPIDGFMSPVYPFPFQNHQQDMDTPGHFHGLVDVLQNKESPPT
DIAEISNGKLDFNNVENRIVDVDQSISRTGSMGDLQDKDTGIENSHRQTI
PFHTRRDEADFQQPLDCNTPSNGIMSETTTVELEKEQKQETNQHERPSIM
NSPQSIQNSDRTNHEETDHQEIPSIIIQNYRLFEDCMAREKRSDTPTIIS
NTVSEMVNSIERNSFRVTVNTQIPLMTIPTEQSQDRSQEEDSAMSPRHDF
PSPNRLPKITFFKESPKTPIDPCKDRLVAFQSPDGLPMTERTEPYILKES
PKTHTDQETTNRIFAKLPESKSSPLTTDSDREEQTTSIADFNSGISFDLL
QIANSIVDTYQSSLKKKGTISNDHIDKEAIISNNGDTRKITSNSENSPKK
IFSVVDMISNTSLERKSPQHSTSQSVNGTDPIQNKDETALLTTPMVIRIP
LTKLPSFKNGTRVIENERINFNNNSIDGTTSTMNPNEQLDLNTNSIEDTT
NSPSKEYESTGNTGSRNPEDDITSTSCATTRITPNLIIDTFPTTETIGEV
TTPSYKEVVSVSSNESTPSPFISSPTIAKSFDGSRRNSNNEVFSVSGTED
GSSSQNNVQKPCSRDSNNDSEIVAKVPSDPPISSSLDENNVSTLTQLKQS
DSQEGSQDAATIHCIKADSPPVYEKFRMSLYGKFDTKYNEVNNNVPVRSR
TLSTDDDLLKEVIEKDEKKSMLMFGHQSKQQNIPVIKSLMDDLFDMCSSQ
EESSHEMTQDSDSQPEYQEPIGIHQVRNQVEGIDNIIDVDDTRDGSSSNL
TSIDLPVREDLQDSINKTTKNLSEAEPTDTNIEKHPTLKSPEAEEDLQYM
MRLISSNLKRMIEESSSGDLKDVQPVNVASVDLEDIEIINLPVESIVDNE
EETVAEPEDEDSTINGNTAKQRSVDAAALVSENSTIDTDDSTRSTVHTEN
STTRLKDVSTHLNSSVSLTKQPLKDVNNNYEEPEDVQNEDEDVDQSQDSA
NESYATSQTDYDSDKENVENVPITFVSDSDVKKLRVDNKQSNWTKKCYSL
RHDFKRVYEDISSDDEFTRLKKEREQKFGYRPVYEEISAEESETDFEADH
PPTNRKSISKKSEPKPVYSPIKSGRDTEESDCDLEQKLKLLADRQPVVKL
EKLNVKKKQSNTEVRRGEAKAVPKSKTRLTELKSKVKKNVNSVKSGPGDL
KWISCLNKPTSLFMDSSDIPLKIKTVGKVAKESPLMSDFLVSDEAPLTTT
KKNRSRPTSPDIKGKKNRSRSNTPTLDVPARTVKKSRSRPTTPTVDTPPL
KTNKKSRSRPSSPTNDTPPMKISRSNSTDCQPSKQKSREFKIPKKAKSPC
KTAVKDLQSSLSADQDNMTSLGSHNKKQNSKLPETTPTNAPPVCIDPQTQ
PDPTSFPLDTILGNMVSLSTSLKVKSSRGSEVLPTSSTSNQLSGTTTSHT
FPSKVCSQQEPNDQSLNGVSNKTLNTVQEGPMDEDLVPVPIINQRKNEEA
PIPSQTSTSTDQTSDLNTRSPTTNSIPSSSLLLKSSGNHKPISGTQGLDP
ILELVGQTKDPGIVKTNDLSRPVQPDTLKLSSKKTQGQHKSSTIPTNKAQ
QTNESYRPQSTVSKESKSKQKVSFAEFIAKKKGMMAPSTKDLTSVEVKKA
PNQVETTRLSTKEPPSTASTSPDTDDITNFVDEELERQIEKQYQLKSPEM
NFTPLKNTSQRQIVLSETIQKLRKLRNQGNQQQEPDSVKTTPRAETKTKG
SSTSDKGSAMVDKGSTTSGKVLAPLQISTDTSKCPKPGVDLLSPTNSISS
ICSIASNESETKIIETDFGKMKVKKSYLKLPHRHEDGVRCVTFCHRLPQN
YKEVDERVLQSQQQQDVRDAPSRAYFKFPHRHSDGTYCETVCSRVLQRET
MRSQTQAQPPPPAAKVEKSYNIPWKLIPITFDDSNKNLLDPRLNSRESEN
PASPDHDDEIDEIVFSPFKSKAIPTQDPRLSPASNTVKKPPVCSFPDQRP
TPGTSVVEASLQEESMNICTGSDSDSELTTSSKKGTVIFDSLDKKKRSEK
KRRWDIPASSETNVFNDVLQAIGEFDSKVDSLSTIKKTSPSKENMSQDHA
ISHTNHGEEASGLTTTGKKDTDNNSTTKNTAGKGTAIDPNRDDNKGIVDQ
PRRFGFIDKSPSLNERFEKICSSPTDNTILSNKETSTKSPSSVNHTATGR
THKKSVTSTPEGLDTSLATPDGGRTPEQDTHLAERNLDYVRSISKQQLSF
HEENTNIELKAALKTPNLPDVTLKDDGIPRYRPLRSDENLLEKQNAVDTK
SKKIKMPSLPFVSGRNTPSPTDHMASTLPNTGLQRRLSSSGSSLYSPTNP
TCLSSNNNSAEASPNPPSRQPSSFEFPLDRTWITENSPLDNNSAPVKNPL
KELSMQKHMQSTMFPFPPAVFPQNNNNPRDWNPLPFLNPSNRYPSLSLSS
VSSGSLTSPIIPSPQSRSTSPSLWSVFSKALSPLLTAKQHTTRRTSSSTS
TSSSTTGPLSPRENRKLTPLHALQESPTHLEAQVTSNIWQRNASTLLIKT
PTIPISQNPEIMSLLDQLMLESLDKLIHEYFNEAPTFQEKSYLLEIARDF
ILGLLEKGNVTSEDLLLQVVDAGIRDALMSVQSHKQQDGYSNSFDSNNSG
SGEYANSSAILTNRFAMTRGISTERQSPVDPRLNRQCSTKSNQDPRSRTV
DEFHRKNPLNWIPAHQCDSSFSNDIKGRSSPVDPRIERRRSSVDGFQSNR
PTSTNEDERINRNFERTNESPEFPQSEHAHDFETNDNLLRDDTNLLDSGK
SFGTRQQFLEEPNISQEENQNFLNDPRLQSSRQSNITTSPLLVEHDEHDI
EISESTIPKWKPISVKSTETKGFRDFSLPRQDETRSDAQHLEDMGLKRSR
RSSTNIEVDARDCHSDSEQGWGGRWNPYETAEDGEICDEVSRKARRKKIP
KQYATDDEEYYEGGRTNDEVDSEIERYIDEKVKNGSARGLDSDHSETSED
EIDANKDRKRKRSEKQKDKRDNKKKKKSRQRSSSDSDQSPYRGSNRGYRN
MPTTIDIKVKLNNRRKVTVKRNDWIKPKQQMVRHVMTKPTDLASMRLSLA
DIEQLNQMNSQAFKEENQ Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 495..515 |
| None | No IPR available | COILS | Coil | Coil | coord: 2600..2620 |
| None | No IPR available | COILS | Coil | Coil | coord: 4456..4476 |
| None | No IPR available | COILS | Coil | Coil | coord: 634..672 |
| None | No IPR available | PFAM | PF13086 | AAA_11 | coord: 442..754
e-value: 9.8E-60
score: 202.4 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 436..803
e-value: 1.8E-31
score: 108.5 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 804..978
e-value: 1.8E-32
score: 111.7 |
| None | No IPR available | PFAM | PF13087 | AAA_12 | coord: 761..959
e-value: 2.2E-52
score: 177.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2539..2580 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3935..3964 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3013..3068 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1434..1456 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3175..3217 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 4431..4502 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..211 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2682..2856 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3623..3679 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1679..1707 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3422..3453 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2349..2467 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3864..3883 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2011..2088 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 4322..4379 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1351..1374 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 4085..4105 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3532..3610 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2876..2995 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 4122..4211 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1863..1887 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1086..1143 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3737..3825 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 538..561 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1922..1978 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3390..3409 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1552..1620 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 497..516 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 3100..3127 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 438..539
coord: 605..974 |
Blast
BLAST of TCONS_00006452-protein vs. Swiss-Prot (Human)
Match: SETX (Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4) HSP 1 Score: 305.449 bits (781), Expect = 2.049e-82 Identity = 247/796 (31.03%), Postives = 399/796 (50.13%), Query Frame = 0
Query: 221 DLFHNSILIWDP---VNLEQGRDELEISTSLQSVPVAGGYNSFDEYMKINWPLMLLETWAQLRKEWDEISANRNSRKAWRVESVEEQPNPKASLITCSWFDVVSKESSQSHTCGIHESDLVILY---------------FNDGQCKYFGIVDSVQRRYHSKRRRKAYQLSVLTCKDEKIKHFKRVEVLRVTTLTTYIRQWNAL-IRFQNSLLCKDILKPFRPQTYCHKSDALIQRTDRLMK----LNQDQFQAVSSAVKAV-HTPYSIPKICLIQGPPGTGKSYTIKTIITHLMQTLALAEKKNSSQDKESKARNAKERSRMLICAPSNAAVDEIVKRLLNSPPTMSKSTQSAAKAPTSPQEKKKNCGDFNLLRVG--YYAEPALRRYTLEYLVEQKMKTMKFQHNPDAIQREIKKLNYILDDLDKTCVKLKLSPDPKEKRELYEKKRE-ERTKMQQKQDDLMKQLASATEKFDFYQERKRYTQTLL-FHADIICCTLSGAGSEWMVKAFKDFQKRAAFNCVLVDEAGQCTEPDLLIPLQFGASKLILVGDQNQLPATVLSKKASRYNYGQSLFERIIYSLGEYRETCSDASRGERPAFLLTTQYRMTKEICSYPSKRFYENKLRPAKQ---LASQKPWPLRPYIVLNI-QGQELKTSDGSLHNPLEREYVLALCQAIT-SRTSIKPGSIGIITPYKQQKHLLQQRFHQDESLK-PITVNTIDGYQGQEKEVIILSCVRGRNQNNTIGFLSHPQRMNVALTRAKKTLVILAN-QSVQIDDDWKDLFANARERNLLF 981
D F +L W +N Q + S+ S PV ++++ +Y + +PLM+L T+ + +EW N +R+ + V + P A I F V +E + E+DLV L D + G V +R + + LS+ T ++ + V + +++L T R+ A+ + + L + +L P P +C K D L ++R++ N+DQ +A+ +A V H+P S+ KICLI GPPGTGKS KTI+ L + L ++K S D+ S A+ +++R+L+CAPSNAAVDE++K+++ K K P NCGD NL+R+G + +++L+ V +MK + + A+ + + L+Y LD+L + +R L RE +R ++ + + K+ K Q R + TQ+++ + IICCTLS +G + AF+ Q F+CV+VDEAGQ E + L PL +KLILVGD QLP TV+S KA Y Y QS+ R L E E + SR P LT QYRM +IC +PS Y L+ +Q + WP +PY+V ++ G E + +D + N E + V+ + + I R + +IGIIT YK QK ++Q+ ++ K P V+T+D +QG++K+ +I++CVR + +IGFL+ QR+NV +TRAK +L IL + +++ + W L +A++R +
Sbjct: 1699 DTFVKEVLKWKYEMFLNFGQCGPPASLCQSI-SRPVPVRFHNYGDYFNVFFPLMVLNTFETVAQEW----LNSPNRENFYQLQVRKFP---ADYIKYWEFAVYLEECELAKQLYPKENDLVFLAPERINEEKKDTERNDIQDLHEYHSGYVHKFRRTSVMRNGKTECYLSIQTQENFPANLNELVNCIVISSLVTTQRKLKAMSLLGSRNQLARAVLNP-NPMDFCTK-DLLTTTSERIIAYLRDFNEDQKKAIETAYAMVKHSP-SVAKICLIHGPPGTGKS---KTIVGLLYRLLTENQRKGHS-DENSNAK--IKQNRVLVCAPSNAAVDELMKKII----LEFKEKCKDKKNPLG------NCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKK-ELPSHVQAMHKRKEFLDYQLDELSR-------------QRALCRGGREIQRQELDENISKVSKERQELASKIKEVQGRPQKTQSIIILESHIICCTLSTSGGLLLESAFRG-QGGVPFSCVIVDEAGQSCEIETLTPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCRLLEENVEH-NMISR--LPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDWPFQPYLVFDVGDGSERRDNDSYI-NVQEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASLQRLNVTITRAKYSLFILGHLRTLMENQHWNQLIQDAQKRGAII 2448
The following BLAST results are available for this feature:
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