TCONS_00006115-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006115-protein
Unique NameTCONS_00006115-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006115-protein ID=TCONS_00006115-protein|Name=TCONS_00006115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
SKLLSTLSPILISPLSSLFNDWLNNSIFPDTLKTAKITMIPKVKNTKKIS
DHRPISLLPAIGKLFEKILANRINSWAEENNIINKEQSGFRNKRSTVDNL
FLLLNDFQEAKIKGERMHAVFVDFEKAFDKINHSLLLFELNSLGIPKYLL
YILHSYLKDRKAYINYSHFKSDTFSLKAGVPQGSCLSPILFSLFVSDIPK
PVNNKIKMSQFADDLATWERYKKAYDSELDEYVEILFDWFSKWGLVVNMD
KTKHINFGTSKMSIWV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003490XLOC_003490Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006115TCONS_00006115Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 44..257
e-value: 1.7E-47
score: 161.7
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 21..266
score: 30.4
NoneNo IPR availableGENE3D3.30.70.270coord: 65..264
e-value: 2.2E-28
score: 98.7
NoneNo IPR availableCDDcd01650RT_nLTR_likecoord: 34..261
e-value: 1.66929E-53
score: 174.016
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 21..257

Blast
[Close]
BLAST of TCONS_00006115-protein vs. Swiss-Prot (Human)
Match: LORF2 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.719e-21
Identity = 70/222 (31.53%), Postives = 107/222 (48.20%), Query Frame = 0 
Query:   11 LISPLSSLFNDWLNNSIFPDTLKTAKITMIPKV-KNTKKISDHRPISLLPAIGKLFEKILANRINSWAEENNIINKEQSGFRNKRSTVDNLFLLLNDFQEAKIKGERMHAVF-VDFEKAFDKINHSLLLFELNSLGIPKYLLYILHSYLKDRKAYINYSHFKSDTFSLKAGVPQGSCLSPILFSLFVSDIPKPVNN------------KIKMSQFADDLATW 218
            L+  L  LF       I P++   A I +IPK  ++T K  + RPISL+    K+  KILANRI    ++  +I+ +Q GF        N+   +N  Q      ++ H +  +D EKAFDKI    +L  LN LGI    L I+ +      A I  +  K + F LK G  QG  LSP+LF++ +  + + +              ++K+S FADD+  +
Sbjct:  488 LVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILANRIQQHIKK--LIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIVLEVLARAIRQEKEIKGIQLGKEEVKLSLFADDMIVY 707
The following BLAST results are available for this feature:
BLAST of TCONS_00006115-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LORF26.719e-2131.53LINE-1 retrotransposable element ORF2 protein OS=H... [more]
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