TCONS_00005936-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005936-protein
Unique NameTCONS_00005936-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1234

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005936-protein ID=TCONS_00005936-protein|Name=TCONS_00005936-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1234bp
MREGATKLIESLEHRYNINQSRIEECRLQRQINAERLLLIEEEISKMSGS
LKFKVLGLYGFSRISPGDTYELTFKIGSHQKWKSKCKVEVHGQRWIEPLF
VFQADVSKSMTIKLAELGSFGKTTGIGEATCYVQEFLSPEPKVFLIPINA
IGTMKVKLGVAWSGLDKTDRKFLSSQKRNPEMSDVDFTNAGVVNLTSFGR
NPPKPEDRSLIQIPNLLPPNTPSTSTPTSSNSSSSSTPSLGGSGGRTQSS
PLPRPNRTSNVSLDNDIQTPNQGLENVRKSSIQGSEMTRKMSSQERPDRE
RTESSPFPRPKRTPGKHGIDTTDLAEELAGYRKVSATVVDAKAQTLPAHA
QGNKTPQTEPRKISNTPDSTQRNDSNNKTPLTDKTTRPKNNSDTRLSESI
TVTSSPIPANKTPQQKKLSSATSSSGGTSIELSITPTKKNSVSNMATKQN
TSITVEKSPVPININKKKSIDEPIKNETPKTSKNNNGHIKTTNVAKVASP
SNTPKTKQNSQIKADRKTPVSSAQKSGSKTPTSTSKNLTGQQKTPQQKTP
QHKQNGQTKISVEKTPTPKPRPNGQIKNTTESSKSKSSSHIKSTEQKTPN
TKAETPKASSTGQLLKERNKSPIVSVQKTPNDTRKISAEVRSSNDMPDPI
YDNKKDSSLDHNKNILPVNLSCESSLDRSAGGSPKVIKSKPIEAKKVNTK
EKESSVLKSEPKKAPSPVVKHKQHKHLQKENSTPVTSKSHTPNQPSQFVT
SGSVAVRSSNQNTSLASRAQNIDVTNDELSQSWPIQSNNWFKETLSRQLL
GSNNGKEAPPVPRGPPIGQKPRKTSKLGPFQDSELSDSNLAIQNCLNVCQ
HIITQLTAKPFIKELAENVEDEMKVLIKAIESFQSRQNRRPSFSESVVIA
LSSFDFLNKDEEDEDPGTLRGQSPTLYILPIQWKRVHRALFHHLCVLFDL
IDVFEKKYGPLQHVAKVTQAAIVRNIKTIRELKRLISEPEEINLQTVCEK
YVQSETLGNTWEVSAATDQPLFCNRAAINMTMSALYNHLRTSTETANTLQ
VQANEVCSAALKHLMGDEQSLTDQDVITVFDFVEFFKRKVQSHNVAEFLQ
HVKMEITALKGLEATDELVVKSTLQQYWHIPIIPSCIQALFKLLSQGKTT
TKANTVNALKQVHKTTATYLEDIIALSLEHKNTPVIVGACLAAGELRLNS
FSEKLRYIHDVGNSVVKDAADYSLKRLGHSYIKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003377XLOC_003377Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005936TCONS_00005936Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031780FAM65_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 866..886
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 343..662
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 674..752
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 800..832
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 196..320
IPR031780FAM65, N-terminalPFAMPF15903PL48coord: 23..177
e-value: 4.1E-25
score: 88.4

Blast
[Close]
BLAST of TCONS_00005936-protein vs. Swiss-Prot (Human)
Match: RIPR2 (Rho family-interacting cell polarization regulator 2 OS=Homo sapiens GN=RIPOR2 PE=1 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 5.029e-20
Identity = 49/136 (36.03%), Postives = 72/136 (52.94%), Query Frame = 0 
Query:   35 ERLLLIEEEISKMSGSLKFKVLGLYGFSRISPGDTYELTFKIGSHQKWKSKCKVEVHG-QRWIEPLFVFQADVSKSMTIKLAELGSFGKTTGIGEATCYVQEFLSPEPKVFLIPINAIGTMKVKLGVAWSGLDKTD 169
            E +  IE E+  + G    K+ GL GF+R+ PGD YE+  K G  Q+WK K K+EV+G Q W     VF   +   ++IK+ EL        +G  TC  +E  +  P+V  + IN +GT+K+ L + W   D  D
Sbjct:  188 ENMCTIEVELENLLGEFSIKMKGLAGFARLCPGDQYEIFMKYG-RQRWKLKGKIEVNGKQSWDGEETVFLPLIVGFISIKVTELKGLATHILVGSVTCETKELFAARPQVVAVDINDLGTIKLNLEITWYPFDVED 322
The following BLAST results are available for this feature:
BLAST of TCONS_00005936-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RIPR25.029e-2036.03Rho family-interacting cell polarization regulator... [more]
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