TCONS_00005872-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005872-protein
Unique NameTCONS_00005872-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length103

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005872-protein ID=TCONS_00005872-protein|Name=TCONS_00005872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MFLEKSVQKCEIDLRSGLYENIILAGGNSMIPGIHERMMTELTALVRPKT
SRTIRIHENKHGIDSVWKGASVLSSLSTFESMLITREEYFEYGNKIVHMK
CFS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003354XLOC_003354Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005872TCONS_00005872Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.420.40coord: 3..100
e-value: 1.3E-30
score: 105.7
NoneNo IPR availableSUPERFAMILY53067Actin-like ATPase domaincoord: 4..102
IPR004000Actin familyPFAMPF00022Actincoord: 4..102
e-value: 3.8E-31
score: 108.0

Blast
[Close]
BLAST of TCONS_00005872-protein vs. Swiss-Prot (Human)
Match: ACTS (Actin, alpha skeletal muscle OS=Homo sapiens GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.165e-25
Identity = 49/97 (50.52%), Postives = 65/97 (67.01%), Query Frame = 0 
Query:    6 SVQKCEIDLRSGLYENIILAGGNSMIPGIHERMMTELTALVRPKTSRTIRIHENKHGIDSVWKGASVLSSLSTFESMLITREEYFEYGNKIVHMKCF 102
            S+ KC+ID+R  LY N +++GG +M PGI +RM  E+TAL  P T + I+I        SVW G S+L+SLSTF+ M IT++EY E G  IVH KCF
Sbjct:  283 SIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA-PSTMK-IKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of TCONS_00005872-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTS2.165e-2550.52Actin, alpha skeletal muscle OS=Homo sapiens GN=AC... [more]
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