TCONS_00005769-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005769-protein
Unique Name	TCONS_00005769-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	824

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005769-protein ID=TCONS_00005769-protein|Name=TCONS_00005769-protein|organism=Clytia hemisphaerica|type=polypeptide|length=824bp
MSNIHVACYIILLVTLTFSPPCCYGNNPAVAVDNRTILNIAFFTPESFRD
IYCLHSAVELAVSYVNNNDSILPNHKIVISRYPLQVDVTRNLAGNLAHRF
FQMMGDNKGTIQGMIGPAQSKTFLALQQFNTKYLIPNIGYAALTDQETSF
SKDYDVRVNPKINSFLDATLHLFKRAGWKKCGILYTQGDDSNSRTNSKLV
ETLLIRLKKIHAKAIVVEKFKESEAFQESTFPKLKKNDVRVIVLISRVAG
LRRTFCEAYKRNYYGKKIVYIVLGLIDSRWHSNSECPRSELFKASNGAIT
FHKVNVRPDGTPTVFGKTGVEVKQGIKEMREKLYGMATRYSCKDNLDTYG
FDAITNMMLGYHHIIQNLYNGSRKFVIERYGDELMMKQAVHSFRYNHFEG
ITGRVSYTDDNERKGNYFQLATIAPRNEFSTKFDIKAYFNGDTLSFKDPN
DGLASIFIGEKIPIDGLREKKVAISLNVSLKYTIWTLTCLLILFSVMFLF
INVIHRNRSLIKMSSPNINNIILLGSILCYTTVIMNGIDSSTVLYYQIGH
YCNTVIVVFAAGFTLLFGGLFIKTWRVYRIFTAVETLKTVAIKDPQLYLM
VFLMLLIDGIICTAWLLVSPYQMTSLEVSRRVISNSTEYVEVYNSCVAIH
DTKFEVAMFLYKGLVMLFGLFMAWETRNVNIAALNDSKQIGMSIYGVVVM
GILGTICMYALEGHKFVNVRYAIVTLAIVVSTFSTVLFVFLPKVVLLYGT
EDRLREKERIRTHSKESSIHNSSNLHTNSYQSNLSSSSSDRHDNNSSVVD
AMEENSSPGQPEMTGNLNVIYEHD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003275	XLOC_003275	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005769	TCONS_00005769	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017978	GPCR_3_C
IPR001828	ANF_lig-bd_rcpt
IPR028082	Peripla_BP_I

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01176	GABABRECEPTR	coord: 571..588 score: 46.46 coord: 552..571 score: 30.0 coord: 253..276 score: 40.53 coord: 721..743 score: 42.69 coord: 480..503 score: 29.92 coord: 519..540 score: 33.47 coord: 601..626 score: 29.72 coord: 51..67 score: 35.29
None	No IPR available	GENE3D	3.40.50.2300		coord: 163..429 e-value: 2.0E-19 score: 69.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 759..824
IPR017978	GPCR family 3, C-terminal	PFAM	PF00003	7tm_3	coord: 492..745 e-value: 5.9E-47 score: 160.3
IPR017978	GPCR family 3, C-terminal	PROSITE	PS50259	G_PROTEIN_RECEP_F3_4	coord: 480..763 score: 21.066
IPR001828	Receptor, ligand binding region	PFAM	PF01094	ANF_receptor	coord: 56..417 e-value: 5.5E-28 score: 98.0
IPR028082	Periplasmic binding protein-like I	SUPERFAMILY	53822	Periplasmic binding protein-like I	coord: 36..463

Blast

[Close]

BLAST of TCONS_00005769-protein vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.305e-69
Identity = 223/763 (29.23%), Postives = 349/763 (45.74%), Query Frame = 0

Query:   57 AVELAVSYVNNNDSILPNHKIVISRYPLQVDVTRNLAGNLAHRFFQMM--GDNKGTIQGMIGPAQSKTFL-ALQQFNTKYLIPNIGYAALTDQETSFSK-DYDVRVNPKINSFLDATLHLFKRAGWKKCGILYTQGDDSNSRTNSKLVETLLIRLKKIHAKAIVVEKFKESEAFQE---STFPKLKKNDVRVIVLISRVAGLRRTFCEAYKRNYYGKKIVYIVLGLIDSRW-------HSNSECPRSELFKASNGAITFHKVNVRPDGTPTVFGKTGVEVKQGIKEMREKLYGMATRYSCKDNLDTYGFDAITNMMLGYHHIIQNLYNGSRKFVIE--RYGDELMMKQAVHSFRYNHFEGITGRVSYTDDNERKGN----YFQLATIAPRNEFSTKFDIKAYFNGDTLSFKDPNDGLASIFIGEKIPIDGLREKKVAISLNVSLKYTIWT-LTCLLILFSVMFLFINVIHRNRSLIKMSSPNINNIILLGSILCYTTVIMNGIDSSTVLYYQIGHYCNTVIVVFAAGFTLLFGGLFIKTWRVYRIFTAVETLKTVAIKDPQLYLMVFLMLLIDGIICTAWLLVSPYQMTSLEVSRR--VISNSTEYVEVYNSCVAIHDTKFEVAMFLYKGLVMLFGLFMAWETRNVNIAALNDSKQIGMSIYGVVVMGILGTICMYALEGHKFVNVRYAIVTLAIVVSTFSTVLFVFLPKVVLLYGTEDRLREKERI---RTHSKESSIHNSSNLHTN-SYQSNLSSSSSDRH 792
            AVELA+  + N +S+L  + + +  Y  + D  + L       F+  +  G N   + G + P+ +     +LQ +N    +  + +AA T       K  Y  R  P  N+   A L L K   WK+ G L TQ     S   + L   L       + + I   +  ++E+F     ++  KLK NDVR+I+         + FC AY+ N YG K  +I+ G  +  W        ++S C R  L  A  G I    V+  P  +  +   +G   +Q  +E   K  G+            Y +D I  +       ++ L+  SR   I+   Y D  + +  +++    +F G+TG+V + +  ER G      FQ +      E++   D     N DT+ F+          I E++       +K+++ L     Y+I + LT L ++ +  FLF N+ +RN+ LIKMSSP +NN+I+LG +L Y ++ + G+D S V        C     +   G+T  FG +F KTWRV+ IF  V+  K + IKD +L ++V  MLLID  I   W  V P + T  + S              +   C   H T +   ++ YKGL+MLFG F+AWETRNV+I ALNDSK IGMS+Y V +M I+G    +        NV++ IV L I+  +  T+  VF+PK++ L    D   +  R    +   KE S  ++S    N +  S L    S+ H
Sbjct:   80 AVELAIEQIRN-ESLLRPYFLDLRLYDTECDNAKGLKA-----FYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWN----LVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTL-TQDVQRFSEVRNDLTGVL-------YGEDI---EISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYI---GVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVG-----PSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRN-GERMGTIKFTQFQDSREVKVGEYNAVADTLEIIN-DTIRFQGSEPPKDKTIILEQL-------RKISLPL-----YSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKKI-IKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQP--NVQFCIVALVIIFCSTITLCLVFVPKLITLRTNPDAATQNRRFQFTQNQKKEDSKTSTSVTSVNQASTSRLEGLQSENH 796

The following BLAST results are available for this feature:

BLAST of TCONS_00005769-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005769-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GABR2	1.305e-69	29.23	Gamma-aminobutyric acid type B receptor subunit 2 ...	[more]

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TCONS_00005769-protein (polypeptide) - C. hemisphaerica