TCONS_00005585-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005585-protein
Unique NameTCONS_00005585-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005585-protein ID=TCONS_00005585-protein|Name=TCONS_00005585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
STSNRGFYLAATILFGLSGIITTLGNTFSLMVLWQPSQRSKSNKILTSLV
ISDCLVGLLSNPMAILMMWTGLEITPSICRLNTIALFFVTWFGSSSGFTI
LFITYDRYISITKPFKYHDIITDLKINLILVTIWVGNSITALLNAINKIL
FLHFLNIGFVIASTILITGYYQIWKAVKQRQTNILSFTLAGMYYSGYGVE
QNFETSYTLYQISAENGLKQSFNALGKMYLNGEGVTKDEQKALQYFMKGA
EKDDAQACMSVAHCYNHGKGVEQNFDHAFIYHKKAADLGYTPGIFNIGTH
YFAGKGVEMDMKKAVKCFHKAAEEGFVLAQVNLGNMYYQGLGVDRDVEKA
RHYYKSAAPNNRNARMLLEELEMEETKLKNEKE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003171XLOC_003171Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005585TCONS_00005585Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR006597Sel1-like
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 361..383
NoneNo IPR availableGENE3D2.60.40.1180coord: 167..243
e-value: 2.5E-16
score: 59.3
coord: 302..383
e-value: 1.1E-23
score: 83.2
coord: 244..301
e-value: 9.5E-18
score: 64.0
NoneNo IPR availableGENE3D1.20.1070.10coord: 1..148
e-value: 9.0E-23
score: 80.2
NoneNo IPR availableSUPERFAMILY81321Family A G protein-coupled receptor-likecoord: 7..184
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 249..366
IPR000276G protein-coupled receptor, rhodopsin-likePRINTSPR00237GPCRRHODOPSNcoord: 10..34
score: 18.08
coord: 151..174
score: 18.32
coord: 42..63
score: 27.26
coord: 89..111
score: 28.27
IPR000276G protein-coupled receptor, rhodopsin-likePFAMPF000017tm_1coord: 25..142
e-value: 7.8E-13
score: 48.2
IPR000276G protein-coupled receptor, rhodopsin-likePROSITEPS00237G_PROTEIN_RECEP_F1_1coord: 95..111
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 327..362
e-value: 1.0E-8
score: 44.9
coord: 255..290
e-value: 1.4E-7
score: 41.2
coord: 183..218
e-value: 0.015
score: 24.5
coord: 219..254
e-value: 8.9E-7
score: 38.5
coord: 291..326
e-value: 3.3E-5
score: 33.3
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 295..325
e-value: 7.2E-4
score: 20.1
coord: 329..358
e-value: 1.2E-7
score: 32.1
coord: 189..217
e-value: 0.82
score: 10.3
coord: 224..254
e-value: 1.2E-5
score: 25.7
coord: 255..290
e-value: 2.6E-5
score: 24.7
IPR017452GPCR, rhodopsin-like, 7TMPROSITEPS50262G_PROTEIN_RECEP_F1_2coord: 25..135
score: 14.454

Blast
[Close]
BLAST of TCONS_00005585-protein vs. Swiss-Prot (Human)
Match: SE1L1 (Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.503e-22
Identity = 67/202 (33.17%), Postives = 102/202 (50.50%), Query Frame = 0 
Query:  170 YYQIW--KAVKQRQTNILSFTLAGMYYSGYGVEQNFETSYTLYQISAENGLKQSFNALGKMYLNGEG-VTKDEQKALQYFMKGAEKDDAQACMSVAHCYNHGKGVEQNFDHAFIYHKKAADLGYTPGIFNIGTHYFAGKGVEMDMKKAVKCFHKAAEEGFVLAQVNLGNMYYQGLGVDRDVEKARHYYKSAAPNNRNARMLL 368
            YYQ    K   Q Q  +    L G    G GVEQN + ++  + ++A  G   +   LGKMY  G   V +  + AL YF K A+  +      +   Y +G+GV+ N+D A  Y +KAA+ G+  G   +G+ Y+ G GV+ D K+A+K F+ A++ G +LA  NL  M+  G GV R    A   +K+     R +  L+
Sbjct:  363 YYQFLAEKGDVQAQVGLGQLHLHG----GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLM 560
The following BLAST results are available for this feature:
BLAST of TCONS_00005585-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SE1L12.503e-2233.17Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L P... [more]
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