TCONS_00005258-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005258-protein
Unique Name	TCONS_00005258-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	700

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005258-protein ID=TCONS_00005258-protein|Name=TCONS_00005258-protein|organism=Clytia hemisphaerica|type=polypeptide|length=700bp
RKTNKTNMISLQVDPYLNTNHSAFITTGTARALKLLNKQWISVEKTVSNN
GVDSLLTMSENIVKEKFEKCEERKTWYPLQVNIYSSFDEEKSYTDDVIYV
STSDLFNILSHSPGLYKQYYDQKIEISFETLRDISTYKEKYTASHSTISL
LYCPYGNCNDNLVDDLLKEHFQKRRLMSPKEIFPIFVQSHQKISRDTPFV
FWFRVDNLVAKDTSHVHQNNGRFVGMETELVLGKNTESYIPFCGCMVKNR
PLLFELFLSKDLRSAYQSYLHQLTDSLRMLKTGKVSTADTAILVEAPTGY
GKGIVLQVFCFDQCLHFTEVNCLDVVSESFAATEKRLKTLVDNVKSSRPC
VLYLKNIHALCKDKEGEKEERRLVSYFANILRELDCHELPLLLVASTNKV
NQMSARFFSLFMYHLCLDAPSADERKHILNTLLNCRLKEANEIALKTSGF
FLSDLIELVRKASPLFRKMLEERHPGEGGEDEISIPECKELFLKAVDEVR
SVKSGTLTNVKVQKVTWKDVGGLENVKKDIFDTIELPMKFPTLFRKNMRR
SGLLFYGPPGCGKTLLAKAVATEFNLNFYSVKGPELINMYVGQSEENVRE
TFKTARRMAPCVVFFDEIDSLAPNRGRTGDSGGVMDRIVSQLLSELDGMH
DNTNVFIIAATNRPDLLDAALLRPGRFDKLVYVGIPEGRDERLKLXRAFR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002999	XLOC_002999	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005258	TCONS_00005258	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003593	AAA+_ATPase
IPR003959	ATPase_AAA_core
IPR003960	ATPase_AAA_CS
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 549..687 e-value: 1.8E-20 score: 84.0
None	No IPR available	GENE3D	3.40.50.300		coord: 493..698 e-value: 1.3E-58 score: 197.8
None	No IPR available	GENE3D	3.40.50.300		coord: 160..432 e-value: 2.5E-10 score: 39.6
None	No IPR available	CDD	cd00009	AAA	coord: 521..684 e-value: 6.05412E-27 score: 106.461
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 292..407 e-value: 2.3E-12 score: 47.4 coord: 553..684 e-value: 4.7E-46 score: 156.4
IPR003960	ATPase, AAA-type, conserved site	PROSITE	PS00674	AAA	coord: 655..673
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 513..695
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 288..460

Blast

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BLAST of TCONS_00005258-protein vs. Swiss-Prot (Human)
Match: PEX6 (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 4.436e-105
Identity = 223/588 (37.93%), Postives = 318/588 (54.08%), Query Frame = 0

Query:  148 ISLLYCPYGNCNDNLVDDLLKEHFQKRRLMSPKEIFPIFVQSHQKISRDTP--FVFW----FRVDNLVAK-----------DTSHVHQNNGRFVGMETELVLGKNTESYIPFCGCMVKNRPLLFELFLSKDLRSAYQSYLHQLTDSLRMLKTGKVSTADTAILVEAPTGYGKGIVLQVFCFDQCLHFTEVNCLDVVSESFAATEKRLKTLVDNVKSSRPCVLYLKNIHALCKDKEGEKEERRLVSYFANILRELD----CHELPLLLVASTNKVNQMSARFFSLFMYHLCLDAPSADERKHILNTLLNCRLKEANEI-----ALKTSGFFLSDLIELVR----------KASPLFRKMLEERHPGEGGEDEISIPECKELFLKAVDEVRSVKSGTLTNVKVQKVTWKDVGGLENVKKDIFDTIELPMKFPTLFRKNMRRSGLLFYGPPGCGKTLLAKAVATEFNLNFYSVKGPELINMYVGQSEENVRETFKTARRMAPCVVFFDEIDSLAPNRGRTGDSGGVMDRIVSQLLSELDGMHDNTNVFIIAATNRPDLLDAALLRPGRFDKLVYVGIPEGRDERLKLXRAF 699
            I ++  P+ + N N  D +L  HFQ  R++   ++  +      +I   +P     W    F+V   V +           DT+H            T L +  +T S +P+   +      L+       L +        L    R+   G + T  +++L+  P G GK  V+   C    LH  +V C  + +ES  A E +L+ +    +  RP VL L  +  L +D++G  E+ R+++   ++L   D    C   PL++VA+T++   + A   + F + L + A S  +R  IL  L    L    E+     A + +GF + DL  L+           K S L   + EE    EG       P   E F +A++++++  S  +   K+  V+W DVGGL+ VKK+I +TI+LP++ P L    +RRSGLL +GPPG GKTLLAKAVATE +L F SVKGPELINMYVGQSEENVRE F  AR  APC++FFDE+DSLAP+RGR+GDSGGVMDR+VSQLL+ELDG+H   +VF+I ATNRPDLLD ALLRPGRFDKLV+VG  E R  +L++  A 
Sbjct:  323 IEIVSSPHYSTNGN-YDGVLYRHFQIPRVVQEGDVLCVPTIGQVEILEGSPEKLPRWREMFFKVKKTVGEAPDGPASAYLADTTH------------TSLYMVGSTLSPVPW---LPSEESTLWSSLSPPGLEALVSELCAVLKP--RLQPGGALLTGTSSVLLRGPPGCGKTTVVAAACSHLGLHLLKVPCSSLCAESSGAVETKLQAIFSRARRCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDPLNSCP--PLMVVATTSRAQDLPADVQTAFPHELEVPALSEGQRLSILRAL-TAHLPLGQEVNLAQLARRCAGFVVGDLYALLTHSSRAACTRIKNSGLAGGLTEED---EGELCAAGFPLLAEDFGQALEQLQTAHSQAVGAPKIPSVSWHDVGGLQEVKKEILETIQLPLEHPELLSLGLRRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKGPELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQDVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAI 886

The following BLAST results are available for this feature:

BLAST of TCONS_00005258-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005258-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PEX6	4.436e-105	37.93	Peroxisome assembly factor 2 OS=Homo sapiens GN=PE...	[more]

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TCONS_00005258-protein (polypeptide) - C. hemisphaerica