TCONS_00005066-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005066-protein
Unique NameTCONS_00005066-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1358

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005066-protein ID=TCONS_00005066-protein|Name=TCONS_00005066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1358bp
VIFVFRTCRKENKMAAADIDNQIKELQNLRGNKDDQETNNKGISFGTALE
AELYGNGDKYQGYDQSIATNDMEEEDDDFTSSTIGKAQSFTAHKSVLKEI
EKEGHNVDPMAEHKIPTVGDRQNEYQQRMRKLLISPARADPFADGGKTPD
VRSRTYMDVLAEQRLVAEKAKVIKKIQDQHKNGEQPQAQSDAKKKRRRWD
QTATEEAPAKKKWDQAETPSNTRWDETPGRQKQTGAETPGTVHGSETPGT
MRGEETPGRTPGATPSTRAWEATPSYIPAGSATPGGATPGGVTPQSTRRK
RWDETPSQQATETPGRTPGWAETPKTDRIGSETPGMTPTPGGGKKRSRWD
ETPQVGGATPGSQTPSAATPSMGTPSGNLNSLMGTPSATPGGTVAMQMQT
PTPGHLISMTPEQMQAYRWEKEIDDRNRPLTDDELDALMPFEGYKILQPP
ANYQPIRTPARKLTATPTPINMGTGFRMQTDERGNVKGVVEEQPPGNLPS
LKPDDYQYFDKLLVDVDETTLSSEEQRERKIMKLLLKIKNGTPPMRKAAL
RQVTDKAREMGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDL
VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPD
IDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIK
IVQQIAILMGCAILPHLRNLVEIIEHGLVDEQQKVRTITALAIAALAESA
TPYGIESFDSVLKPLWKGIKQHRGKGLAAFLKAIGYLIPLMDAEYAYHYT
REVMIILIREFQSPDEEMKKIVLKVVKQCCATDGVEANYIKEEILPEFFK
NFWTHRMALDRRNYRQLVDTTVEVANKVGAAHIVGRVVDDLKDENEQYRK
MVLETIEKVMANLGASEIDSRLEEQLIDGILYAFQEQTNEDVVMLNGFGT
VINAFGARTKPYLPQICGTILWRLSNKNAKVRQQAADLIARTSVVMKTCG
EEKLMGHLGVVLYESFGEEYPEVLGSILGAMKSIVNVIGMSKMTPPIKDL
LPRLTPILKNRHEKVQENCIDLVGRIADRGAEHVSAREWMRICFELLELL
KAHKKAIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAI
XLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNG
VLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAAIKHMS
IGVFGFGCEDALTHLINHVWPNIFETSPHVINAVIEALEGFRVGLGPLKL
MQYVMQGLFHPARKVRDIYWKIYNGLYIASQDALVAGYPSIPNEPENSFL
RNELHYIL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002867XLOC_002867Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005066TCONS_00005066Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015016SF3b_su1
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 12..39
NoneNo IPR availableCOILSCoilCoilcoord: 888..908
NoneNo IPR availableCDDcd00020ARMcoord: 1021..1115
e-value: 2.82209E-5
score: 43.072
IPR015016Splicing factor 3B subunit 1PFAMPF08920SF3b1coord: 344..483
e-value: 1.8E-42
score: 144.5
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1157..1321
e-value: 2.3E-6
score: 25.7
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 121..955
e-value: 8.7E-48
score: 162.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 956..1156
e-value: 1.5E-18
score: 66.0
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 656..1135
coord: 534..620
coord: 1193..1338

Blast
[Close]
BLAST of TCONS_00005066-protein vs. Swiss-Prot (Human)
Match: SF3B1 (Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3)

HSP 1 Score: 1936.38 bits (5015), Expect = 0.000e+0
Identity = 989/1368 (72.30%), Postives = 1113/1368 (81.36%), Query Frame = 0 
Query:   18 DIDNQIKELQNLRGNKDDQETNNKGISFGTALEAELYGNGD-KYQGYDQSIATNDMEEEDDDFTSST--IG-KAQSFTAHKSVLKEIEKEGHNVDPMAEHKIPTVGDRQNEYQQRMRKLLISPARADPFADGGKTPD--VRSRTYMDVLAEQRLVAEKAKVIKKIQDQHKNGE-----QPQAQSDAKKKRRRWDQTATEEAPAKKK----WDQAETPSNT---RWDETPGRQKQTGAETPGTVHGSETPGTMRGEETPGRTPGATPSTRAWEATPSYIPAGSATPG-GATPGGVTP------QSTRRKRWDETPSQQATETPGRTPGWAETPKTDRIGSETPGMTPTPGGGKKRSRWDETP--QVGGATPGSQTPSAATPSMGTPSGNLNSLMGTPSATPGGTVAMQMQTPTPGHLISMTPEQMQAYRWEKEIDDRNRPLTDDELDALMPFEGYKILQPPANYQPIRTPARKLTATPTPINMGTGFRMQTDERGNVKGVVEEQPPGNLPSLKPDDYQYFDKLLVDVDETTLSSEEQRERKIMKLLLKIKNGTPPMRKAALRQVTDKAREMGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNIDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRNLVEIIEHGLVDEQQKVRTITALAIAALAESATPYGIESFDSVLKPLWKGIKQHRGKGLAAFLKAIGYLIPLMDAEYAYHYTREVMIILIREFQSPDEEMKKIVLKVVKQCCATDGVEANYIKEEILPEFFKNFWTHRMALDRRNYRQLVDTTVEVANKVGAAHIVGRVVDDLKDENEQYRKMVLETIEKVMANLGASEIDSRLEEQLIDGILYAFQEQTNEDVVMLNGFGTVINAFGARTKPYLPQICGTILWRLSNKNAKVRQQAADLIARTSVVMKTCGEEKLMGHLGVVLYESFGEEYPEVLGSILGAMKSIVNVIGMSKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEHVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIXLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAAIKHMSIGVFGFGCEDALTHLINHVWPNIFETSPHVINAVIEALEGFRVGLGPLKLMQYVMQGLFHPARKVRDIYWKIYNGLYIASQDALVAGYPSIPNEPENSFLRNELHYIL 1358
            DI+ QI+E+Q  +   D  E    G+      + E+YG  D ++ GY  SIA  ++E++DDD++SST  +G K   + A  ++L +I +     DP AEH+ P + DR++EY++  R ++ISP R DPFADGGKTPD  + +RTYMDV+ EQ L  E+ ++ +++ ++ K GE        A     K++RRWDQTA +   A  K    WDQAETP +T   RWDETPGR K           GSETPG             ATP ++ W+ TPS+ PAG+ATPG G TPG  TP       S R+ RWDETP  +  +TPG   GWAETP+TDR G ++ G TPTPG  K++SRWDETP  Q+GG+TP                      + TP  TP GT AM M TPTPGH++SMTPEQ+QA+RWE+EID+RNRPL+D+ELDA+ P EGYK+L PPA Y PIRTPARKLTATPTP+   TGF MQT++R      V +QP GNLP LKPDD QYFDKLLVDVDE+TLS EEQ+ERKIMKLLLKIKNGTPPMRKAALRQ+TDKARE GAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDN+DEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLR+LVEIIEHGLVDEQQKVRTI+ALAIAALAE+ATPYGIESFDSVLKPLWKGI+QHRGKGLAAFLKAIGYLIPLMDAEYA +YTREVM+ILIREFQSPDEEMKKIVLKVVKQCC TDGVEANYIK EILP FFK+FW HRMALDRRNYRQLVDTTVE+ANKVGAA I+ R+VDDLKDE EQYRKMV+ETIEK+M NLGA++ID +LEEQLIDGILYAFQEQT ED VMLNGFGTV+NA G R KPYLPQICGT+LWRL+NK+AKVRQQAADLI+RT+VVMKTC EEKLMGHLGVVLYE  GEEYPEVLGSILGA+K+IVNVIGM KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE+VSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP DVLATLLNNLKVQERQNRVC                    TTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A ++HMS+GV+GFGCED+L HL+N+VWPN+FETSPHVI AV+ ALEG RV +GP +++QY +QGLFHPARKVRD+YWKIYN +YI SQDAL+A YP I N+ +N+++R EL YIL
Sbjct:   10 DIEAQIREIQGKKAALD--EAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAATELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYKKHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK-----------GSETPG-------------ATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE-RDTPGHGSGWAETPRTDR-GGDSIGETPTPGASKRKSRWDETPASQMGGSTP----------------------VLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQTEDR--TMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVC--------------------TTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304
The following BLAST results are available for this feature:
BLAST of TCONS_00005066-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3B10.000e+072.30Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF... [more]
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