TCONS_00005053-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005053-protein
Unique NameTCONS_00005053-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length346

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005053-protein ID=TCONS_00005053-protein|Name=TCONS_00005053-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MAAMRRVCLVGSGNWGSAIAKIIGNNVMKSKLFEKTVNMYVYEEMVDGQK
LTDIINKRHENVKYLPGVQLPSNVVAIPSLVDACKDANVLVFVIPHQFVD
RICNQLKGNLAPDAVGVSLIKGLSQSSVGIENMSDIIGQQLDINCSALMG
ANIAHEVADEQFCESTIGCTEETLWPMWKELFHCSYFKINCVRDVHTVEL
CGALKNAVAVGAGIIDALEFGDNTKAAVIRLGLIEMRLFAKHFFSGVEET
TFFESCGLADLITTCYGGRNRKVAEAFVRTGKSLEELEAEMLNGQKLQGP
HTAFQVYQLLKEKNIEKQFPLFTSVYRICYENEDPSHLIDTLRDHY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002862XLOC_002862Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005053TCONS_00005053Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006168G3P_DH_NAD-dep
IPR011128G3P_DH_NAD-dep_N
IPR0133286PGD_dom_2
IPR017751G3P_DH_NAD-dep_euk
IPR006109G3P_DH_NAD-dep_C
IPR016040NAD(P)-bd_dom
IPR0089276-PGluconate_DH_C-like
Vocabulary: Cellular Component
TermDefinition
GO:0009331glycerol-3-phosphate dehydrogenase complex
Vocabulary: Molecular Function
TermDefinition
GO:0004367glycerol-3-phosphate dehydrogenase [NAD+] activity
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287NAD binding
GO:0016491oxidoreductase activity
GO:0042803protein homodimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0006072glycerol-3-phosphate metabolic process
GO:0055114oxidation-reduction process
GO:0046168glycerol-3-phosphate catabolic process
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0046168 glycerol-3-phosphate catabolic process
biological_process GO:0006072 glycerol-3-phosphate metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0009331 glycerol-3-phosphate dehydrogenase complex
molecular_function GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
molecular_function GO:0042803 protein homodimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006168Glycerol-3-phosphate dehydrogenase, NAD-dependentPRINTSPR00077GPDHDRGNASEcoord: 147..167
score: 57.0
coord: 187..211
score: 51.27
coord: 9..26
score: 65.32
coord: 254..271
score: 74.92
coord: 71..98
score: 50.97
coord: 212..236
score: 63.03
IPR006168Glycerol-3-phosphate dehydrogenase, NAD-dependentPIRSFPIRSF000114Glycerol-3-P_dhcoord: 1..346
e-value: 3.0E-93
score: 310.5
IPR006168Glycerol-3-phosphate dehydrogenase, NAD-dependentPROSITEPS00957NAD_G3PDHcoord: 202..223
IPR011128Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminalPFAMPF01210NAD_Gly3P_dh_Ncoord: 7..172
e-value: 2.9E-48
score: 163.7
IPR0133286-phosphogluconate dehydrogenase, domain 2GENE3D1.10.1040.10coord: 194..346
e-value: 4.2E-60
score: 201.7
IPR017751Glycerol-3-phosphate dehydrogenase, NAD-dependent, eukaryoticTIGRFAMTIGR03376TIGR03376coord: 6..341
e-value: 1.5E-147
score: 489.1
IPR006109Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminalPFAMPF07479NAD_Gly3P_dh_Ccoord: 194..339
e-value: 5.1E-49
score: 166.1
NoneNo IPR availableGENE3D3.40.50.720coord: 2..193
e-value: 8.8E-41
score: 139.3
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 3..194
IPR0089276-phosphogluconate dehydrogenase C-terminal domain-likeSUPERFAMILY481796-phosphogluconate dehydrogenase C-terminal domain-likecoord: 194..345

Blast
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BLAST of TCONS_00005053-protein vs. Swiss-Prot (Human)
Match: GPDA (Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Homo sapiens GN=GPD1 PE=1 SV=4)

HSP 1 Score: 431.024 bits (1107), Expect = 5.779e-152
Identity = 205/344 (59.59%), Postives = 265/344 (77.03%), Query Frame = 0 
Query:    3 AMRRVCLVGSGNWGSAIAKIIGNNVMKSKLFEKTVNMYVYEEMVDGQKLTDIINKRHENVKYLPGVQLPSNVVAIPSLVDACKDANVLVFVIPHQFVDRICNQLKGNLAPDAVGVSLIKGLSQSSVGIENMSDIIGQQLDINCSALMGANIAHEVADEQFCESTIGCTEETLWPMWKELFHCSYFKINCVRDVHTVELCGALKNAVAVGAGIIDALEFGDNTKAAVIRLGLIEMRLFAKHFFSG-VEETTFFESCGLADLITTCYGGRNRKVAEAFVRTGKSLEELEAEMLNGQKLQGPHTAFQVYQLLKEKNIEKQFPLFTSVYRICYENEDPSHLIDTLRDH 345
            A ++VC+VGSGNWGSAIAKI+G N  +   F+  V M+V+EE + G+KLT+IIN +HENVKYLPG +LP NVVA+P +V A +DA++L+FV+PHQF+ +IC+QLKG+L  +A G+SLIKG+ +   G++ +S++IG++L I  S LMGANIA EVADE+FCE+TIGC +     + KEL     F+I  V++V TVE+CGALKN VAVGAG  D L FGDNTKAAVIRLGL+EM  FAK F SG V   TF ESCG+ADLITTCYGGRNRKVAEAF RTGKS+E+LE E+LNGQKLQGP TA ++Y +L+ K +  +FPLF +VY++CYE +     I  L++H
Sbjct:    2 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNH 345
The following BLAST results are available for this feature:
BLAST of TCONS_00005053-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPDA5.779e-15259.59Glycerol-3-phosphate dehydrogenase [NAD(+)], cytop... [more]
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