TCONS_00004965-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004965-protein
Unique NameTCONS_00004965-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004965-protein ID=TCONS_00004965-protein|Name=TCONS_00004965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MVLSTLRGVLARRPLLKSVVTVTSLITAADISCQLIENKGETFNWIRLRN
MMSIGVCYYGPFYYYYYGMLDRKLPGKNPRTIALKLLIDQVVVTIPSLAI
FYVFISAIEGKNIEETKTELRSKFLPTYATACCFWPGIQALNFALVPPQY
RVLMVSTSTFVWLTFLSYVKNRPKLPYLFVKINELTGVQTTEVEG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002813XLOC_002813Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004965TCONS_00004965Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 107..167
e-value: 3.3E-20
score: 71.9

Blast
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BLAST of TCONS_00004965-protein vs. Swiss-Prot (Human)
Match: M17L2 (Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.435e-27
Identity = 60/173 (34.68%), Postives = 93/173 (53.76%), Query Frame = 0 
Query:   11 ARRPLLKSVVTVTSLITAAD---ISCQLIENKGETFNWIRLRNMMSIGVCYYGPFYYYYYGMLDRKLPGKNPR---TIALKLLIDQVVVTIPSLAIFYVF-ISAIEGKNIEETKTELRSKFLPTYATACCFWPGIQALNFALVPPQYRVLMVSTSTFVWLTFLSYVKNRPKLP 176
             R  L+ + +   +L+ A D    S ++    G+ F+  R  +M ++G C  GPF +Y+Y  LDR  P    R    +  K+L+DQ+V + P L ++Y   +  +EG+ + E+  ELR KF   Y    C WP  Q +NF  VPPQ+RV  ++  T  W T+LSY+K R  +P
Sbjct:   22 GRALLVTNTLGCGALMAAGDGVRQSWEIRARPGQVFDPRRSASMFAVG-CSMGPFLHYWYLSLDRLFPASGLRGFPNVLKKVLVDQLVAS-PLLGVWYFLGLGCLEGQTVGESCQELREKFWEFYKADWCVWPAAQFVNFLFVPPQFRVTYINGLTLGWDTYLSYLKYRSPVP 192
The following BLAST results are available for this feature:
BLAST of TCONS_00004965-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
M17L21.435e-2734.68Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE... [more]
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