TCONS_00004819-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004819-protein
Unique Name	TCONS_00004819-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	551

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004819-protein ID=TCONS_00004819-protein|Name=TCONS_00004819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=551bp
MMQFCSETLNEKLDISIQIIDSVIAIIVILFALFENIFVLLLLWKHRHFR
TPTDIFIACLTVADLFVITLPVPFFIGLYIGKWNASQPWQQAYHVVDTIS
STISITCLSILAFDRYFIIVHPYIYQRKITLNLSLIMVASIWVYGISTGV
LRIVFSEETFSWFTILVLYGWPISLIIFCHVNVAIIAKQHAKKILKLQVH
KTSGKGIKERYSVLRKLSKAKFHSKKNDKKVSIKSNHLKINSEIEIDYSS
ECSVSTNSSRQKTEPTKSDSAIQVRNLSRADSSSIRFRVSLNYSNVTLQK
NIEEIVNEERQDEANKEKNGRKKLPPLARRSKILSYINEELNDNLSEQNP
SNSTDKEGSDAKKPEVEPAKQEVLKHSMSSPQISLKSDANRKLKATLKKS
DSLPFTNAAGQPTLGRQFRHIVRRNIDKNRQKRLIREEVMKIIHQIRRLR
RELKAAILLTIVMVIFLCLWMPFWYIHIMVIGGRFDGTDKSHCLLLKYFK
LLHYVNATINPVYYVLLNSKLRNACKTLFESIRYRNKRKVRPEKNDTTDA
I

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002728	XLOC_002728	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004819	TCONS_00004819	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 432..452
None	No IPR available	GENE3D	1.20.1070.10		coord: 2..532 e-value: 5.0E-55 score: 186.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..385
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 444..539 coord: 16..195
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 53..74 score: 31.14 coord: 455..479 score: 24.62 coord: 97..119 score: 31.33 coord: 20..44 score: 20.54 coord: 496..522 score: 28.32 coord: 133..154 score: 15.8 coord: 161..184 score: 14.62
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 35..514 e-value: 4.5E-30 score: 104.7
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 103..119
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 35..514 score: 23.561

Blast

[Close]

BLAST of TCONS_00004819-protein vs. Swiss-Prot (Human)
Match: ACM3 (Muscarinic acetylcholine receptor M3 OS=Homo sapiens GN=CHRM3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.734e-18
Identity = 119/549 (21.68%), Postives = 214/549 (38.98%), Query Frame = 0

Query:   17 IQIIDSVIAIIVILFALFENIFVLLLLWKHRHFRTPTDIFIACLTVADLFVITLPVPFFIGLYI-GKWNASQPWQQAYHVVDTISSTISITCLSILAFDRYFIIVHPYIYQRKITLNLSLIMVASIWVYGISTGVLRIVF--------------------SEETFSWFTILVLYGWPISLIIFCHVNVAIIAKQHAKKILKLQ-----------VHKTSGKGIKERYSVLRKLSKAKFHSKKNDKKVSIKSNHLKINSE-IEIDYSSECSVSTNSSRQKTEPTKSDSAIQVRNLSRADSSSIRFRVSLNYSNVTLQKNIEEIVNEERQDEANKEKNGRKKLPPLARRSKILSYINEELNDNLSEQNPSNSTDKEGSDAKKPEVEPAKQEVLKHSMSSPQISLKSDANRKLKATLKKSDSLPFTNAAGQPTLGRQFRHIVRRNIDKNRQKRLIREEVMKIIHQIRRLRRELKAAILLTIVMVIFLCLWMPFWYIHIMVIGGRFDGTDKSHCLLLKYFKL---LHYVNATINPVYYVLLNSKLRNACKTLF 529
            I  +  ++A++ I+     NI V++    ++  +T  + F+  L  ADL +  + +  F    I  +W         +  +D ++S  S+  L +++FDRYF I  P  Y+ K T   + +M+   WV         I+F                    SE T ++ T +  +  P++++   +  +    ++  K++  LQ           VH T        Y + ++  K     K         +   K +SE ++ D+SS  S + N           D+A  + N + +D   I       YS V        I+N  +   ++  +   ++L  +    K          D L  Q    S D  GS  K     P + E      S+   +  SD N  +    K + +LP   +  + TL ++F    R  I K ++  L++E+               KAA  L+ +++ F+  W P+   +IMV+   F  +    C+   ++ L   L Y+N+T+NPV Y L N   R   K L 
Sbjct:   71 IAFLTGILALVTII----GNILVIVSFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACDLWLAIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKRTKELAGLQASGTEAETENFVHPTGSSRSCSSYELQQQSMKRSNRRKYGRCHFWFTTKSWKPSSEQMDQDHSSSDSWNNN-----------DAAASLENSASSDEEDIGSETRAIYSIVLKLPGHSTILNSTKLPSSDNLQVPEEELGMVDLERKA---------DKLQAQ---KSVDDGGSFPKSFSKLPIQLE------SAVDTAKTSDVNSSVG---KSTATLPL--SFKEATLAKRFALKTRSQITKRKRMSLVKEK---------------KAAQTLSAILLAFIITWTPY---NIMVLVNTFCDS----CIPKTFWNLGYWLCYINSTVNPVCYALCNKTFRTTFKMLL 559

The following BLAST results are available for this feature:

BLAST of TCONS_00004819-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004819-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACM3	9.734e-18	21.68	Muscarinic acetylcholine receptor M3 OS=Homo sapie...	[more]

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TCONS_00004819-protein (polypeptide) - C. hemisphaerica