TCONS_00004784-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004784-protein
Unique NameTCONS_00004784-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004784-protein ID=TCONS_00004784-protein|Name=TCONS_00004784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MGYPAKLTEEEQALVNKYAILKKKKRAQHSQKSQANESKEIIKVTAPRKE
TNSKEPVKPKDAKEAMEKAKKMLASGQLKLGKESGNRPFKRARSSTVDGK
PKKAPVEVKQQTPQQVQKIDNIRRDSYNNFVHSNNEKDNDQQQASPRKHF
DHNRRNGQRKLYITGYNLTRAILDKAFEGHSSKRSSYFDQDKGCGYVDFV
TPEAAEKAMNDLHGSQVDGCILKVVYARRQPYHVDDNRYTKRHNNVRPDD
PGRNNRRHSGDHFHQRRGPRRDSGQRSSDESPVKQDLAKKRKLVEYTEPE
GDFDF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002705XLOC_002705Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004784TCONS_00004784Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 160..225
e-value: 2.2E-4
score: 30.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 167..222
e-value: 3.5E-6
score: 26.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 159..229
score: 11.196
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 144..231
NoneNo IPR availableGENE3D3.30.70.330coord: 132..240
e-value: 4.9E-14
score: 51.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..305
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..115

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004784-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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