TCONS_00004770-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004770-protein
Unique NameTCONS_00004770-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004770-protein ID=TCONS_00004770-protein|Name=TCONS_00004770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MLLILSRHGKLTALGAYYDVMSSSEDLPLFEVTDESCHIRESSIRPGQSF
IKTWRLRNIGATVWPNNLKLKFTGGTNFGHGECASLPPLSPNEVTDVTIT
MISPATDGQYEGQWRVVTLAGVLCGTMLKVQVNVDSSGMNSLTEQMSSLG
QPQQFFGVTGGAAPTQPMSTPLRPAVNATPFCSPTGYGLFGSGNLPNNGG
VNTGQLPRINEGANMSIDPQQMNQLLNDPSMYTNNQNFNNGPFDS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002700XLOC_002700Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004770TCONS_00004770Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR032350N_BRCA1_central
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 20..145
e-value: 4.3E-5
score: 23.2
IPR032350Next to BRCA1, central domainPFAMPF16158N_BRCA1_IGcoord: 41..134
e-value: 9.0E-22
score: 77.6
IPR032350Next to BRCA1, central domainCDDcd14947NBR1_likecoord: 42..135
e-value: 3.41541E-27
score: 100.828

Blast
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BLAST of TCONS_00004770-protein vs. Swiss-Prot (Human)
Match: CF106 (Uncharacterized protein C6orf106 OS=Homo sapiens GN=C6orf106 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 7.281e-29
Identity = 64/190 (33.68%), Postives = 94/190 (49.47%), Query Frame = 0 
Query:   12 TALGAYYDVMSSSEDLPLFEVTDESCHIRESSIRPGQSFIKTWRLRNIGATVWPNNLKLKFTGGTNFGHGECASLPPLSPNEVTDVTITMISPATDGQYEGQWRVVTLAGVLCGTMLKVQVNVDSSGMNSLTEQMSSLGQPQQFFGVTGGAAPTQPMSTPLRPAV-NATPFCSPTGYGLFGSGNLPNNGG 200
             A+GAYYD  S +  +P     ++       SI P   F+KTWR++N GA  WP  + LK+ GG  FGH     +  L P E+ DV++ M SP+  G Y+GQWR+ T  G+  G ++ V ++V+  G+  +T+Q+SS                T+  + P R    N  PF SP         NL + GG
Sbjct:   57 AAIGAYYDFESPNISVPSMSFVEDVTIGEGESIPPDTQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFGHVNMVMVRSLEPQEIADVSVQMCSPSRAGMYQGQWRMCTATGLYYGDVIWVILSVEVGGLLGVTQQLSSF--------------ETEFNTQPHRKVEGNFNPFASPQKNRQSDENNLKDPGG 232
The following BLAST results are available for this feature:
BLAST of TCONS_00004770-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CF1067.281e-2933.68Uncharacterized protein C6orf106 OS=Homo sapiens G... [more]
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