TCONS_00004576-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004576-protein
Unique Name	TCONS_00004576-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	531

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004576-protein ID=TCONS_00004576-protein|Name=TCONS_00004576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=531bp
MVHYRWLVRKFRGWRSMSSYNCNEKEMESQKVEKTENVGNDKEELFNTFY
NSVTLHGFKFLFEKSSMLRKGVWFLIIMVAFMCSIALFFDLVGDFLERKT
NIDTIEYYEENHEFPTLTICPYDSQSKQKLNNLTVNYTKADFLDLVQRIS
QPTSENLSLTPEIQNFLKELDTRNVKNYMELLSMYNMDFKDLIDNRVYLN
NETCQYYSKYCSKQDFETVIWNNHQTCIEFNSFISGKPSLVVGKIDNRFR
GFQLYLDLGQTSYFRTADLHGVMVMINKFGNAHHLLPDKSYVSVKPGEMA
FIKLKEYESSLLPPPYHSNCGTREYHLINKKRPYTNTLCKFDCITNHVYQ
KCGCVGDEMKHIKKRSVKLCTLEKMICYNYYKALFMEKKYKDCFNQCPQE
CTQTTYKVKKATVMIGSDEVYKNIQRTVPSKANMTLTEIKEYFRENIVGI
HVSFFDNIIIKEKMIPSVRWTCLIASVGGGVGLGLGFSFITAFEFVFFIY
DYIKLSLRRVMSSRKERRDVIQVVKMNMNAD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002570	XLOC_002570	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004576	TCONS_00004576	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001873	ENaC

Vocabulary: **Biological Process**
Term	Definition
GO:0006814	sodium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005272	sodium channel activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006814	sodium ion transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005272	sodium channel activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.470.10		coord: 99..368 e-value: 1.9E-18 score: 66.5
None	No IPR available	GENE3D	1.10.287.770		coord: 421..504 e-value: 4.3E-10 score: 39.3
IPR001873	Epithelial sodium channel	PFAM	PF00858	ASC	coord: 49..498 e-value: 3.5E-58 score: 197.5

Blast

[Close]

BLAST of TCONS_00004576-protein vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.582e-25
Identity = 128/511 (25.05%), Postives = 220/511 (43.05%), Query Frame = 0

Query:   32 VEKTENVGNDKEELFNTFYNSVTLHGFKFLFEKSSM-LRKGVWFLIIMVAFMCSIALFF----DLVGDFLERKTNIDTIEYYEENHEFPTLTICPYDSQSKQKLNNLTVN--YTKADFLDLVQRISQPTSENLSLTPEIQNFLKELDTRNVKNY-------MELLSMYNMDFKDLIDNRVYLNNETCQYYSKYCSKQDFETVIWNNHQTCIEFNSFISGKPSLVVGKIDNRFRGFQLYLDLGQTSYF-------RTADLHGVMVMINKFGNAHHLLPDKSYVSVKPGEMAFIKLKEYESSLLPPPYHSNCGTREYHLINKKRPYTNTLCKFDCITNHVYQKCGCVGDEMKHIKKRSVKLCTLEKMI-CYNYYKALFMEKKYKDCFNQCPQECTQTTYKVKKATVMIGSDEVYKNIQRTVPSKANMTLTEIKEYFRENIVGIHVSFFDNI---IIKEKMIPSVRWTCLIASVGGGVGLGLGFSFITAFEFVFFIYDYIKLSLRRVMSSRKER 517
            ++++ + G+ +      F N+ TLHG + +F    + +R+ +W     VAF+ S+ L      + V  +   +      E   ++  FP +T+C   + +  + + LT N  Y   + L L+    Q    +L+  P +   L++    N K+Y       +E L     D KD++   +Y     C++  + C  QDF T ++  +  C  FNS   GKP L   K      G ++ LD+ Q  Y         T    GV V I+       +   +    V PG   F+  +E   + LPPP+   C + E  L +    Y+ T C+ DC T ++ + C C    M H+   +   CT E+   C      L  EK    C  + P  C  T Y  + + V I S    K +++    K N +    ++Y  ENI+ + + FF+ +    I++K    V    L+  +GG +GL +G S +T  E   +IY+ IK  L  ++   ++ 
Sbjct:    3 LKESPSEGSLQPSSIQIFANTSTLHGIRHIFVYGPLTIRRVLW----AVAFVGSLGLLLVESSERVSYYFSYQHVTKVDEVVAQSLVFPAVTLC---NLNGFRFSRLTTNDLYHAGELLALLDVNLQIPDPHLA-DPSVLEALRQ--KANFKHYKPKQFSMLEFLHRVGHDLKDMM---LY-----CKFKGQECGHQDF-TTVFTKYGKCYMFNSGEDGKPLLTTVK-GGTGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFI--QELGFGVAPGFQTFVATQEQRLTYLPPPW-GECRSSEMGL-DFFPVYSITACRIDCETRYIVENCNC---RMVHMPGDA-PFCTPEQHKECAEPALGLLAEKDSNYCLCRTP--CNLTRYNKELSMVKIPSKTSAKYLEK----KFNKS----EKYISENILVLDI-FFEALNYETIEQKKAYEV--AALLGDIGGQMGLFIGASILTILELFDYIYELIKEKLLDLLGKEEDE 472

The following BLAST results are available for this feature:

BLAST of TCONS_00004576-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004576-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ASIC2	9.582e-25	25.05	Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC...	[more]

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TCONS_00004576-protein (polypeptide) - C. hemisphaerica