TCONS_00004542-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004542-protein
Unique NameTCONS_00004542-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length553

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004542-protein ID=TCONS_00004542-protein|Name=TCONS_00004542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
MDESLDETFNERTLEIQSLTRYGHDLLMKGSTVEASEAFLNAYQFAKQEN
NPYVVRACSFNLGACYVASGQAKVGLKYLEMAMPSVIDDDGLENFSDLWY
NIAVARHSMGDIEQASIAYQKAQEGYNRLDSRKLEAECLSKLAVCYHLLR
RLSESKTSYYKAHESYERLGDRNNQALCLVSLTGVFSELKDIDGCAKVLD
ILLDVCQDLEDCSLQAKIYHDIGLLYISEKLYESAAECFEQSLKSMDKEL
VENSIDKHLKATVLQNLGAVCNYMSSYQKAIDYHQKAIDIFGEISDRSSQ
TEVFANLAYAFTKTEDYENSIMAFKHAVRSAKDTGNQEAQFLATEGLAAA
YFRNGNYDKSVPTYKEALSLIPPSKPGSDKVSYTDRIVSKLSDAMQFQLE
IQQKEAESGDSPRRNKNTAFYHKDSVNTMRFFQEKQHSLIAKGLEAHSSD
GEEQASSSEDDQSSLSTSVSQKQQQQQQQQKNKQNYNNEGMNFSMKSTLN
KSNYYEQPVQDDEQIPRAVKEYYLAQVCRENNAKKEEPAPKEKKESSKMC
LIM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002555XLOC_002555Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004542TCONS_00004542Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 469..489
NoneNo IPR availableGENE3D1.10.150.200coord: 81..142
e-value: 1.3E-8
score: 34.1
coord: 143..180
e-value: 9.8E-5
score: 21.7
NoneNo IPR availablePFAMPF14938SNAPcoord: 30..173
e-value: 5.5E-6
score: 25.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 403..422
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..513
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 529..553
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 261..294
e-value: 0.0038
score: 26.4
coord: 96..129
e-value: 2.3
score: 17.2
coord: 341..374
e-value: 0.36
score: 19.9
coord: 216..249
e-value: 1.9
score: 17.5
coord: 136..169
e-value: 9.4
score: 15.2
coord: 301..334
e-value: 9.6
score: 15.1
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 302..333
e-value: 0.012
score: 15.6
coord: 216..244
e-value: 6.3E-4
score: 19.7
coord: 347..372
e-value: 0.017
score: 15.2
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 16..49
score: 5.163
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 96..129
score: 6.195
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 216..249
score: 8.998
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 341..374
score: 9.381
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 301..334
score: 8.201
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 261..294
score: 7.582
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 3..80
e-value: 0.018
score: 14.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 305..350
e-value: 1.3E-4
score: 21.4
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 242..304
e-value: 6.6E-12
score: 45.5
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 181..241
e-value: 2.0E-5
score: 23.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 351..496
e-value: 5.9E-5
score: 22.0
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 159..372
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 16..208
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 96..129
score: 6.802
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 216..374
score: 18.928

Blast
[Close]
BLAST of TCONS_00004542-protein vs. Swiss-Prot (Human)
Match: TTC24 (Tetratricopeptide repeat protein 24 OS=Homo sapiens GN=TTC24 PE=4 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.920e-45
Identity = 120/394 (30.46%), Postives = 197/394 (50.00%), Query Frame = 0 
Query:   16 IQSLTRYGHDLLMKGSTVEASEAFLNAYQFA---KQENNPYVVRACSFNLGACYVASGQAKVGLKYLEMAMPSVIDDDGLENFSDLWYNIAVARHSMGDIEQASIAYQKAQEGYNRLDSRKLEAECLSKLAVCYHLLRR-------LSESKTSYYKAHESYERLGDRNNQALCLVSLTGVFSELKDIDGCAKVLDILLDVCQDLEDCSLQAKIYHDIGLLYISEKLYESAAECFEQSLKSMDKELVENSIDKHLKATVLQNLGAVCNYMSSYQKAIDYHQKAIDIFGEISDRSSQTEVFANLAYAFTKTEDYENSIMAFKHAVRSAKDTGNQEAQFLATEGLAAAYFRNGNYDKSVPTYKEALSLIPPSKPGSDKVSYTDRIVSKLSDAMQFQL 399
            IQ+LTR GH  L  G   EA   F  A+  A    Q  +  V++AC+FNLGA YV +G    GL+ L  A P   +        D  +N+A+A H++G++ QA   Y +A   Y     +  + E  +K+  CY  L +       L E+  +Y +  +           A C++      S    +    +VL+    + +   +  L   +Y+D+GL Y   +L+  A E F Q+L       V        +ATVL+NLG   N + +YQ+A ++HQKA D+ G +  R  Q   F +LA+A ++  D++ +   + HA+++A+D+G+ + Q+ A EGL AA  R G YD+++  YKEAL+         +  S  +R+V+KL+D ++ +L
Sbjct:   36 IQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRDTPVLQACAFNLGAAYVETGDPARGLELLLRAHPE--EKAQGRRHGDQCFNVALAYHALGELPQALAWYHRALGHYQ---PQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAAALALGAAAGCMLK-----SGRHRVGEVVQVLEKSRRLAERSTERRLLGHLYNDLGLGYSQLQLFPLAVEAFLQALPLC---WVPGE-----QATVLRNLGMAHNALGNYQEAREFHQKAADLHGSVGQRWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGDMKGQWQACEGLGAAAARLGQYDQALKYYKEALAQC-----QKEPDSVRERLVAKLADTVRTRL 406
The following BLAST results are available for this feature:
BLAST of TCONS_00004542-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC244.920e-4530.46Tetratricopeptide repeat protein 24 OS=Homo sapien... [more]
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