TCONS_00003433-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003433-protein
Unique NameTCONS_00003433-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003433-protein ID=TCONS_00003433-protein|Name=TCONS_00003433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MSDLDALRQEAENLKNQIRDARKVAQDTNFASAAANVEAINRIQLRTRRT
LRGHLAKIYAMHWASDSRSLVSASQDGKLIVWDSYTTNKVHAIPLRSSWV
MTCAYAQSGNYVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCR
FLDDSQILTSSGDTTCCLWDIETGQQLTSFIGHTGDVMSISLCNDDNRTF
VSGACDASAKVWDIRTGMCTQTFTGHESDINAVSYFPSNSAFGTGSDDAT
CRLFDIRSDQEMMCYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNAWDT
LKGERAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRVWN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001915XLOC_001915Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003433TCONS_00003433Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001632Gprotein_B
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..28
NoneNo IPR availablePIRSFPIRSF002394GNBP_Bcoord: 1..341
e-value: 1.1E-161
score: 535.5
NoneNo IPR availableGENE3D1.10.10.670coord: 295..341
e-value: 8.2E-9
score: 34.8
coord: 259..294
e-value: 4.4E-8
score: 32.4
coord: 210..258
e-value: 8.7E-17
score: 60.3
NoneNo IPR availableCDDcd00200WD40coord: 48..341
e-value: 3.65098E-85
score: 260.73
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 70..84
score: 41.24
coord: 200..214
score: 36.93
coord: 157..171
score: 36.74
IPR001632G-protein, beta subunitPRINTSPR00319GPROTEINBcoord: 70..84
score: 83.23
coord: 107..124
score: 76.09
coord: 89..104
score: 82.58
coord: 51..67
score: 65.95
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 173..213
e-value: 6.8E-7
score: 38.9
coord: 216..255
e-value: 2.9E-7
score: 40.1
coord: 86..125
e-value: 0.025
score: 23.8
coord: 302..341
e-value: 1.2E-5
score: 34.7
coord: 132..170
e-value: 1.7E-6
score: 37.6
coord: 44..83
e-value: 3.4E-7
score: 39.9
coord: 258..299
e-value: 0.011
score: 24.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 174..213
e-value: 0.0013
score: 19.5
coord: 136..170
e-value: 1.3E-4
score: 22.6
coord: 218..255
e-value: 3.1E-5
score: 24.5
coord: 48..83
e-value: 1.0E-4
score: 22.9
coord: 266..299
e-value: 0.0025
score: 18.5
coord: 307..341
e-value: 5.5E-4
score: 20.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 309..341
score: 14.519
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 139..179
score: 10.308
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 51..92
score: 13.75
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 180..222
score: 12.781
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 223..264
score: 11.945
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 144..209
e-value: 2.0E-21
score: 75.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 5..143
e-value: 7.5E-24
score: 83.3
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 70..84
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 286..300
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 157..171
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 51..341
score: 53.653
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 6..341

Blast
[Close]
BLAST of TCONS_00003433-protein vs. Swiss-Prot (Human)
Match: GBB4 (Guanine nucleotide-binding protein subunit beta-4 OS=Homo sapiens GN=GNB4 PE=1 SV=3)

HSP 1 Score: 592.038 bits (1525), Expect = 0.000e+0
Identity = 280/341 (82.11%), Postives = 309/341 (90.62%), Query Frame = 0 
Query:    1 MSDLDALRQEAENLKNQIRDARKVAQDTNFASAAANVEAINRIQLRTRRTLRGHLAKIYAMHWASDSRSLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAQSGNYVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDSQILTSSGDTTCCLWDIETGQQLTSFIGHTGDVMSISLCNDDNRTFVSGACDASAKVWDIRTGMCTQTFTGHESDINAVSYFPSNSAFGTGSDDATCRLFDIRSDQEMMCYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNAWDTLKGERAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRVWN 341
            MS+L+ LRQEAE L+NQI+DARK   D       +N++++ RIQ+RTRRTLRGHLAKIYAMHW  DSR LVSASQDGKLI+WDSYTTNK+HAIPLRSSWVMTCAYA SGNYVACGGLDNICSIY+LKTREGNVRVSRELPGHTGYLSCCRFLDDSQI+TSSGDTTC LWDIET QQ T+F GH+GDVMS+SL + D RTFVSGACDAS+K+WDIR GMC Q+FTGH SDINAVS+FP+  AF TGSDDATCRLFD+R+DQE++ YSHDNIICGITSVAFSKSGRLLLAGYDDFNCN WDTLKG+RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLR+WN
Sbjct:    1 MSELEQLRQEAEQLRNQIQDARKACNDATLVQITSNMDSVGRIQMRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELPGHTGYLSCCRFLDDSQIVTSSGDTTCALWDIETAQQTTTFTGHSGDVMSLSL-SPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDATCRLFDLRADQELLLYSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLRIWN 340
The following BLAST results are available for this feature:
BLAST of TCONS_00003433-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GBB40.000e+082.11Guanine nucleotide-binding protein subunit beta-4 ... [more]
back to top