TCONS_00002233-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002233-protein
Unique NameTCONS_00002233-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002233-protein ID=TCONS_00002233-protein|Name=TCONS_00002233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MKLRRFLLRYYPPGIILEYEQSKSMKTKSIDLLELKPESDVDAILEELTV
REPLITSSRAKQVRNLIIKLQEKLASTSTSTFYLFKVLRAHILPLTNVAF
NKNGSSFITGSYDRTCKVWDTSSGEELYTLEGHRNVVYAVAFNNPYGDKV
ATGSFDKTCKLWSAETGKCYHTFKGHLAEIVCVTFNPQSTIVATGSMDNT
AKLWDVQKGNEIATLNGHSAEIICLTFNTTGEQLLTGSFDHTCNVWDVQA
GRRLHTLIGHRGEISNCTFNFDGSLIVSASMDQTCRIWDADNGKCIGTLR
GHGEEVLDVTFDATGQYIVACSADGIGRVYNSTTQQCICKLEGHEGEISK
VVFNPQGTRVLTASSDHTARLWDPITGECLQVLEGHTEEIFSCAFNYEGN
IILTGSKDNTCRLWR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001182XLOC_001182Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002233TCONS_00002233Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 192..206
score: 42.66
coord: 276..290
score: 35.24
coord: 107..121
score: 35.22
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 123..163
e-value: 6.1E-8
score: 42.4
coord: 81..120
e-value: 7.5E-7
score: 38.8
coord: 208..247
e-value: 7.1E-9
score: 45.5
coord: 292..331
e-value: 4.8E-7
score: 39.4
coord: 166..205
e-value: 5.0E-11
score: 52.6
coord: 250..289
e-value: 5.4E-9
score: 45.9
coord: 376..415
e-value: 1.1E-10
score: 51.5
coord: 334..373
e-value: 3.1E-10
score: 50.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 293..331
e-value: 4.8E-5
score: 23.9
coord: 336..373
e-value: 5.9E-6
score: 26.8
coord: 85..120
e-value: 8.3E-6
score: 26.4
coord: 210..247
e-value: 1.9E-5
score: 25.2
coord: 252..289
e-value: 5.7E-8
score: 33.2
coord: 167..205
e-value: 4.3E-9
score: 36.7
coord: 377..414
e-value: 5.5E-8
score: 33.3
coord: 124..163
e-value: 2.5E-6
score: 28.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 257..298
score: 14.652
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 383..415
score: 15.187
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 130..172
score: 13.082
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 88..129
score: 14.986
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 215..256
score: 15.555
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 299..340
score: 9.64
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 173..214
score: 16.791
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 341..382
score: 15.655
NoneNo IPR availableGENE3D1.10.10.670coord: 161..206
e-value: 3.1E-23
score: 81.0
coord: 114..134
e-value: 2.4E-10
score: 39.7
coord: 286..325
e-value: 1.5E-15
score: 56.4
NoneNo IPR availableGENE3D2.40.50.140coord: 371..415
e-value: 5.8E-19
score: 67.0
coord: 326..370
e-value: 5.8E-16
score: 57.4
coord: 207..242
e-value: 6.2E-19
score: 66.9
coord: 243..285
e-value: 4.2E-20
score: 70.7
coord: 38..113
e-value: 1.2E-7
score: 30.8
NoneNo IPR availableGENE3D2.40.10.120coord: 135..160
e-value: 8.3E-8
score: 31.2
NoneNo IPR availableCDDcd00200WD40coord: 84..373
e-value: 8.35707E-95
score: 288.079
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 192..206
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 276..290
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 234..248
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 88..415
score: 87.213
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 90..415

Blast
[Close]
BLAST of TCONS_00002233-protein vs. Swiss-Prot (Human)
Match: DAW1 (Dynein assembly factor with WDR repeat domains 1 OS=Homo sapiens GN=DAW1 PE=1 SV=1)

HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 290/415 (69.88%), Postives = 352/415 (84.82%), Query Frame = 0 
Query:    1 MKLRRFLLRYYPPGIILEYEQSKSMKTKSIDLLELKPESDVDAILEELTVREPLITSSRAKQVRNLIIKLQEKLASTSTSTFYLFKVLRAHILPLTNVAFNKNGSSFITGSYDRTCKVWDTSSGEELYTLEGHRNVVYAVAFNNPYGDKVATGSFDKTCKLWSAETGKCYHTFKGHLAEIVCVTFNPQSTIVATGSMDNTAKLWDVQKGNEIATLNGHSAEIICLTFNTTGEQLLTGSFDHTCNVWDVQAGRRLHTLIGHRGEISNCTFNFDGSLIVSASMDQTCRIWDADNGKCIGTLRGHGEEVLDVTFDATGQYIVACSADGIGRVYNSTTQQCICKLEGHEGEISKVVFNPQGTRVLTASSDHTARLWDPITGECLQVLEGHTEEIFSCAFNYEGNIILTGSKDNTCRLWR 415
            MKL+  LLRYYPPGI+LEYE+   +KTKSIDLL+L P +DV A++EE+   EPL+T+SR +QV+ LI +LQEKL   S  TFYLFKVL+AHILPLTNVA NK+GS FITGSYDRTCK+WDT+SGEEL TLEGHRNVVYA+AFNNPYGDK+ATGSFDKTCKLWS ETGKCYHTF+GH AEIVC++FNPQST+VATGSMD TAKLWD+Q G E+ TL GHSAEII L+FNT+G++++TGSFDHT  VWD   GR+++ LIGH  EIS+ +FN+D SLI++ SMD+TC++WDA NGKC+ TL GH +E+LD  FD TG+ I   SADG  R++++ T++CI KLEGHEGEISK+ FNPQG  +LT SSD TAR+WD  TG+CLQVLEGHT+EIFSCAFNY+GNI++TGSKDNTCR+WR
Sbjct:    1 MKLKSLLLRYYPPGIMLEYEKHGELKTKSIDLLDLGPSTDVSALVEEIQKAEPLLTASRTEQVKLLIQRLQEKLGQNSNHTFYLFKVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIWR 415
The following BLAST results are available for this feature:
BLAST of TCONS_00002233-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DAW10.000e+069.88Dynein assembly factor with WDR repeat domains 1 O... [more]
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