TCONS_00001353-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001353-protein
Unique Name	TCONS_00001353-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1143

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001353-protein ID=TCONS_00001353-protein|Name=TCONS_00001353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1143bp
EKNQKKKVKIIRKISTKMINEATQENNNKEVRKDSFTKKENHHQKEIILE
KHHLELLLIEFKNGSSSRAGSKASAKSSLSPTAKQMDCETFSQTLSEIIK
RDGLIQNDDLINSSCQMLFKKIDWRKRGIISWDDVCSYFILESKDSEEVI
DKQSAFVSQPHIVKFSTLKDNISKLVPESNPSRFILVTKTGHICMFTSDL
CLSKKLHMEDPLETSLDEVPKKRRTKLWVTDCVCIKELNKLVICTANRDL
QIFDLSTPHCSQQFQLYALPNAVLCMVYHYIPSNPYDQLWLFFGTDNGDV
HWLKFHMANKSLFQMPFKKTDSCWKILFSDLANQSKYVSHQLFSHMHSDW
VRRLQYVPQGDLLFSCSSNGHDSLVYRSLDETKRKVYVFKVTKGIECFAY
NKELALIATGGVDHVLRLWDPYVTSKPMAILKTHQTSIIDVMIYEPLQQV
VSYSKDGVIMTWDIKDQSPLQHLSIKFPFTGTVLEHGGFPLCLTSHGSLF
VAAEDCIAELKLTTAGAHRQNASHKGCVVAVYHIPHKNQIISASEFGDIC
TWSLDSGRKSSTIQTNQKSKEVLAFTIDKNAEFAVTGHIDGSGQLWNLIS
GKQEKTLAAYSDEEITNCIALPNASIIFMLGWSKKILMYKNTNQYKKLTT
LRPDTGWLSISSHKDDIISAAFWEPHFLATGTFDGDIFIWHIEHERLWRK
IQIGRGQPLFQSLVNQYIMPPRTARSGRRREKQHQVLRVSDEERPPTNQQ
QKEHGEYTMPVDLLLYLGHRDHETYASLIATEGNRVNWWSTTAIGTPVAS
FTISEDTEKVITAITSDLDNRYVIVGTNQGEVSIWNIVTYGVYRRFADVV
REGTPSTPKSTPLTETFRERPPCVHTWSCRSMDMIVSLCCFKRDKEMVAV
GLETGCISLFALSGDYIGMFSQIEPWNLTESSERIQTKSPNIEEPQRELC
TEKDEEEEEKVDLNIKNDVHNNEAENLVGEPADVQQSQSLPELGVSNRPP
IPASTTGSVGGNTKDNTISNDVQKMKKTEYYQTISSINDDIVQQKAAWSL
LGEKYNSNFKRRMQERLSRRRHFSDVTVASGDKPLLQHSGGLGNLCSPFQ
ALSTKDCEDFVLPKGLPITSRMTAHSIDPYNGNSLEQMSSFGH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000728	XLOC_000728	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001353	TCONS_00001353	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..39
None	No IPR available	COILS	Coil	Coil	coord: 946..973
None	No IPR available	GENE3D	2.80.10.50		coord: 506..561 e-value: 1.2E-4 score: 21.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 724..754
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 992..1018
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 932..958
None	No IPR available	SUPERFAMILY	101908	Putative isomerase YbhE	coord: 347..370 coord: 222..317
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 653..691 e-value: 0.61 score: 18.4 coord: 338..377 e-value: 6.5 score: 11.9 coord: 870..911 e-value: 320.0 score: 1.2 coord: 215..254 e-value: 330.0 score: 1.1 coord: 556..597 e-value: 10.0 score: 10.6 coord: 600..640 e-value: 220.0 score: 2.2 coord: 424..463 e-value: 0.99 score: 17.0 coord: 794..836 e-value: 4.4 score: 12.9 coord: 514..553 e-value: 130.0 score: 3.7 coord: 382..420 e-value: 0.0016 score: 27.7
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 386..420 e-value: 0.0053 score: 17.5
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 660..700 score: 8.871
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 431..472 score: 9.773
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 395..420 score: 8.67
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 330..505 e-value: 1.2E-18 score: 66.6
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 562..993 e-value: 3.9E-25 score: 87.9
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 9..327 e-value: 2.4E-9 score: 36.0
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 344..700 score: 16.744
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 659..712 coord: 760..841 coord: 873..913
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 337..473 coord: 522..692

Blast

[Close]

BLAST of TCONS_00001353-protein vs. Swiss-Prot (Human)
Match: WDR49 (WD repeat-containing protein 49 OS=Homo sapiens GN=WDR49 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.018e-42
Identity = 129/479 (26.93%), Postives = 219/479 (45.72%), Query Frame = 0

Query:  374 LVYRSLDETKRKVYVFKVTKGIECFAYNKELALIATGGVDHVLRLWDPYVTSKPMAILKTHQTSIIDVMIYEPLQQVVSYSKDGVIMTWDIKDQSPLQHLSIKFPFTGTVLEHGGFPLCL----TSHGSLFVAAEDCIAELKLTTAGAHRQNASHKGCVVAVYHIPHKNQIISASEFGDICTWSLDSGRKSSTIQTNQKSKEVLAFTIDKNAEFAVTGHIDGSGQLWNLISGKQEKTLAAYSDEEITNCIALPNASIIFMLGWSKKILMYK--NTNQYKKLTTLRPDTGWLSISSHKDDIISAAFWEPHFLATGTFDGDIFIWHIEHERLWRKIQIGRGQPLFQSLVNQYI-MPPRTARSGRRREKQHQVLRVSDEERPPTNQQQKE-HGEYTMPVDLLLYLGHRDHETY---ASLIATEGN-RVNWWSTTAIGTPVASFTISEDTEKVITAITSDLDNRYVIVGTNQGEVSIWNIVTY 840
            + +R   + +  +  F + +GI  F Y+  L LIAT G+++ + LW+PYV SKP+ +L  H  S+I V  +   +Q+ S+SKD V+  WDI+ Q  +Q ++  FP +           CL     +HG LF++  + +A L + +  + R   SH+  V  V +     Q+IS+     +  W +D+G+K         + E+    +D N    +TG  DG+ ++W+  +G    TL    D  +     L     I + GW + I +++  N NQ+     ++P+  W     H DDI+ AAF  P  L TG++DG+I +W+   E     +      P +Q L+   +   P+   S  R +  H +      +   T  +  E   E    V  L +L  R +      A+L++  G+  V +W        +A F        +I  +++D  NRY+  G   G + IWNI  Y
Sbjct:    1 MAWREKSKKRLNMTSFNIAQGIHAFDYHSRLNLIATAGINNKVCLWNPYVVSKPVGVLWGHSASVIAVQFFVERKQLFSFSKDKVLRLWDIQHQLSIQRIACSFPKSQDF-------RCLFHFDEAHGRLFISFNNQLALLAMKSEASKRVK-SHEKAVTCVLYNSILKQVISSDTGSTVSFWMIDTGQKIKQFTGCHGNAEISTMALDANETRLLTGSTDGTVKIWDF-NGYCHHTLNVGQDGAVDISQILILKKKILVTGWERAITVFRPQNFNQF----FIQPEE-WKGGIQHHDDILCAAFLPPQTLVTGSYDGEIVLWNNSTENAHHVL-----HPDYQRLLKSKLDTKPQKLLSAGRSQPSHPM-----ADHSTTGVRNFEIDTEGKNAVMRLCFLKARKNTAVTGGANLVSCGGSGYVRFWDIYK-KQLLAEFLAHSGVGSII--MSTDKMNRYLTTGDLDGWLKIWNIEEY 452

The following BLAST results are available for this feature:

BLAST of TCONS_00001353-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001353-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR49	3.018e-42	26.93	WD repeat-containing protein 49 OS=Homo sapiens GN...	[more]

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TCONS_00001353-protein (polypeptide) - C. hemisphaerica