TCONS_00000556-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000556-protein
Unique NameTCONS_00000556-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000556-protein ID=TCONS_00000556-protein|Name=TCONS_00000556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
FIIVVLRLNKKKKKERKEKKRERTIALKENMLTVDTFTSSNSPLEYTNAP
LVTTTSNKAKLSHRQTHTRESSNQNRKASSARHLAENLRIRIKPKHGTTN
KNQFCCSTSKNGDGSNEGCCGLLKSTKLGKFCRTVCSCVAQTMANQDEIK
IPEPLVTNGQVDRRRVCINISGKKYETLESTLAKYPETLLALPQRELFFD
SLNGEYFFDRNRKAFGAILTYCQTGVLVKPANLDDRIFAAELRFFGFEAE
SQAHIPQNPINESENLLPQNKILRKLWQLFEFPDTSFVARIVSLFSMSVI
LLSIVMFCIETLPEFKEPTYKTWIDSNNRTRKEVKGFTTKRVYEPVFATT
EAACIAWFTFEYCIRLIASPRKFQFLYQPLNMIDLVAIIPFYIMLVLKQT
NTNVSSLSILRVLRLVRVFRIFKLSRYSKGLKILGYTFRASLQELGLLAF
FLLIGIILFASAAYYCEEQVKDTKFRSIIHGFWWAIVTMTTVGYGDMTPE
TLGGQLVGSFCVLVGVLAIAFPVPVIVNNFTYYYTXLPKSEQIFTKFLKF
HLKLGSG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000329XLOC_000329Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000556TCONS_00000556Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR003968K_chnl_volt-dep_Kv
IPR003972K_chnl_volt-dep_Kv1
IPR000210BTB/POZ_dom
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005515protein binding
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005515 protein binding
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..30
NoneNo IPR availableGENE3D1.20.120.350coord: 287..442
e-value: 2.7E-35
score: 120.5
NoneNo IPR availableGENE3D1.10.287.70coord: 443..494
e-value: 5.8E-18
score: 64.3
NoneNo IPR availableGENE3D3.30.710.10coord: 161..273
e-value: 1.4E-17
score: 63.4
NoneNo IPR availableGENE3D1.20.5.110coord: 496..531
e-value: 1.9E-11
score: 42.9
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 285..530
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 205..224
score: 55.15
coord: 283..311
score: 40.85
coord: 349..372
score: 46.43
coord: 444..467
score: 56.31
coord: 504..530
score: 61.32
coord: 375..395
score: 50.02
coord: 415..441
score: 65.1
coord: 475..497
score: 71.94
IPR003968Potassium channel, voltage dependent, KvPRINTSPR01491KVCHANNELcoord: 420..428
score: 74.17
coord: 205..215
score: 68.79
coord: 444..458
score: 61.0
coord: 515..526
score: 75.35
IPR003972Potassium channel, voltage dependent, Kv1PRINTSPR01496SHAKERCHANELcoord: 303..314
score: 78.66
coord: 206..216
score: 71.18
coord: 280..296
score: 43.19
IPR000210BTB/POZ domainSMARTSM00225BTB_4coord: 164..264
e-value: 1.1E-5
score: 34.8
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 290..534
e-value: 4.0E-46
score: 157.1
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 166..250
e-value: 1.4E-18
score: 66.9
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 164..249

Blast
[Close]
BLAST of TCONS_00000556-protein vs. Swiss-Prot (Human)
Match: KCNA2 (Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2)

HSP 1 Score: 364.77 bits (935), Expect = 1.290e-120
Identity = 190/394 (48.22%), Postives = 261/394 (66.24%), Query Frame = 0 
Query:  164 RRVCINISGKKYETLESTLAKYPETLLALPQREL-FFDSLNGEYFFDRNRKAFGAILTYCQTGV-LVKPANLDDRIFAAELRFF--GFEAESQAHIPQNPINESENLLPQNKILRKLWQLFEFPDTSFVARIVSLFSMSVILLSIVMFCIETLPEFK---EPTYKTWIDSNNRTRKEVKGFTTKRVYEPVFATTEAACIAWFTFEYCIRLIASPRKFQFLYQPLNMIDLVAIIPFYIMLVLK--------QTNTNVSSLSILRVLRLVRVFRIFKLSRYSKGLKILGYTFRASLQELGLLAFFLLIGIILFASAAYYCEEQVKDTKFRSIIHGFWWAIVTMTTVGYGDMTPETLGGQLVGSFCVLVGVLAIAFPVPVIVNNFTYYYTXLPKSEQ 542
             RV INISG ++ET   TLA++PETLL  P++ + +FD L  EYFFDRNR +F AIL Y Q+G  L +P N+   IF+ E+RF+  G EA       +  I E E  LP+N+  R++W LFE+P++S  ARI+++ S+ VIL+SIV FC+ETLP F+   E  + + +  +  +   + G+     +   F   E  CI WF+FE+ +R  A P K  F    +N+ID+VAIIP++I L  +        Q      SL+ILRV+RLVRVFRIFKLSR+SKGL+ILG T +AS++ELGLL FFL IG+ILF+SA Y+ E   ++++F SI   FWWA+V+MTTVGYGDM P T+GG++VGS C + GVL IA PVPVIV+NF Y+Y    + E+
Sbjct:   33 ERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPLPENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTI-GYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPEDAQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEE 425
The following BLAST results are available for this feature:
BLAST of TCONS_00000556-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA21.290e-12048.22Potassium voltage-gated channel subfamily A member... [more]
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