TCONS_00000040-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000040-protein
Unique NameTCONS_00000040-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1322

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000040-protein ID=TCONS_00000040-protein|Name=TCONS_00000040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1322bp
MKKRRCFTVVCHFPSLCQPVKVGRSLVHVAFVNRNGESVYIKDETPNQLD
TSNENGGDVSLIHHLTTSTTTTTTSTAAPTNQLRRCLQSNVYYGVALKGG
WTSGKFTDKGIVPDLKTCVNHCCNEPDCDLVMLLRQKCFTIHCYSLDDCQ
TTPNGHAHIAYVARDGYHLNPTTRPPTHTRPKPRISTEEPHSANGPTRNG
PPVSNHAKYPSMSGKRPDMVLHYTFEKLDEDLVIDESSFNNNGKLLEGAS
VSPAGGIRGNGVSFFGGAILLDSQTFKPKPLKAITVALWVKLQDVAGRNT
LFATMGQNERNGFRLTVIEGKISWLYVIDGHEKSFQLRTGPILTRNKWFQ
ITATADGDVGEAKVYVNGGIQSIGVTRGQFSTDWGVKAGFGVHEGGHPLH
GIMDDVYIFSSALSKDEVLNYIKKFDEMRFLMTPAPVTVPVTRRPTPTSR
KMTIKIKTFKPSTTTTTTTTPPTTTTTSTTTTTIQPTTFTTLSTKTVTKP
LSLQQNRCKFGNVYEYTDLKGGLGAGNFLDRGITPNVQVCMELCCAHTTC
DLAYVVSSRCYLVECYTTELCSVVPKGLGSVSPVIGMIIRPDGPKIPQLG
DNVVLPPTRPWTTNEPGVTPDSLKNMKDLKLALEDTLNPFKHKKKTPKKC
IFKKTLSKTTFVGGLKAGNFTNKGTVTSMSVCKAMCCQSDRCDVAVMMKN
GCFLLTCKSAELCKPRKAQTESFTLKLAYRDKVKEMEAIETEEDNDEDDE
TEDEDSHTSSTSTALPLNPKISPTLPVPVLLQESLTDNGKLQKPISDTIP
PVLRPQNGVTSWCSPSFILAGVELNGGIQSGPSKILGNVSTIQECVSECC
RVPDCTVAYTEGKTCYAVLCLNQNICQARISTPSKSLGYVVRNGWSLFPS
EQNAFKGAAFLNTQRPEIIPDTTLQTTTTTTSTPTTTTSTVTTTLATTNL
ATTPLTTTTEIPKNVSIDISSITPESTVNKTETCRSNGTLTDHRFVAGMK
AGIFTDHGELSDVDDIPSCVKYCCLDKLCDVAYMVGRRCYTLQCFSRQTC
QTFPAPNFFLNPVIAFVVRTKPPKVDIISVDFIKHNYTVPLTNSTFRNSS
MTDKPSINVKLSKKTMDNSNQPSKENDEFVEDQVESGSGSGIDSPGFTRG
NVPDAVLDQFEKTQERLPQPTERYYFPLSDVDSNVIKSLSDDKDFTECSS
TKYGCEHFCITLLHGGPRCMCRNGYQLALDGQHCLYEGECEPKAHGCDQA
CKFVTDGFQCQCRSGYVLKKTAYKSSCQDLDECAMDMHSCSHGCLNTPGS
YVCQCPGGYQLGTDRLTCQLII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000026XLOC_000026Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000040TCONS_00000040Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR001881EGF-like_Ca-bd_dom
IPR013032EGF-like_CS
IPR018097EGF_Ca-bd_CS
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR009030Growth_fac_rcpt_
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000742EGF-like domainSMARTSM00181egf_5coord: 1239..1278
e-value: 0.0028
score: 26.9
coord: 1282..1319
e-value: 6.5E-4
score: 29.0
coord: 1197..1235
e-value: 0.0015
score: 27.8
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 1279..1319
score: 10.926
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 1279..1319
e-value: 1.0E-9
score: 48.3
coord: 1239..1278
e-value: 1.0
score: 1.7
coord: 1194..1235
e-value: 0.056
score: 11.9
IPR001881EGF-like calcium-binding domainPFAMPF07645EGF_CAcoord: 1279..1318
e-value: 9.4E-9
score: 35.3
NoneNo IPR availablePFAMPF13385Laminin_G_3coord: 280..418
e-value: 7.4E-18
score: 65.0
NoneNo IPR availableGENE3D2.10.25.10coord: 1285..1321
e-value: 3.3E-14
score: 52.3
NoneNo IPR availableGENE3D2.10.25.10coord: 1232..1259
e-value: 0.016
score: 14.8
NoneNo IPR availableGENE3D2.10.25.10coord: 1260..1284
e-value: 3.3E-6
score: 26.9
NoneNo IPR availableGENE3D2.10.25.10coord: 1189..1231
e-value: 2.3E-8
score: 33.6
NoneNo IPR availableGENE3D2.60.120.200coord: 202..426
e-value: 5.2E-29
score: 101.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1112..1148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 736..771
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 462..481
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 1303..1318
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 1219..1234
IPR018097EGF-like calcium-binding, conserved sitePROSITEPS01187EGF_CAcoord: 1279..1303
IPR000152EGF-type aspartate/asparagine hydroxylation sitePROSITEPS00010ASX_HYDROXYLcoord: 1294..1305
IPR009030Growth factor receptor cysteine-rich domainSUPERFAMILY57184Growth factor receptor domaincoord: 1194..1320
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 215..421

Blast
[Close]
BLAST of TCONS_00000040-protein vs. Swiss-Prot (Human)
Match: MATN2 (Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 1.337e-19
Identity = 50/124 (40.32%), Postives = 66/124 (53.23%), Query Frame = 0 
Query: 1198 CSSTKYGCEHFCITLLHGGPRCMCRNGYQLALDGQHCLYEGECEPKAHGCDQACKFVTDGFQCQCRSGYVLKKTAYKSSCQDLDECAMDMHSCSHGCLNTPGSYVCQCPGGYQLGTDRLTCQLI 1321
            CS+ ++ C HFCI +  G   C C+ GY L  D   C  +  C  + H C+Q C  V   F CQC SGY L +   +  C  +D CA + H C H C+N  GSY+CQC  G+ L  D+ TC  I
Sbjct:  242 CSTLEHNCAHFCINIP-GSYVCRCKQGYILNSDQTTCRIQDLCAMEDHNCEQLCVNVPGSFVCQCYSGYALAEDGKR--CVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPDKKTCTKI 362

HSP 2 Score: 88.9669 bits (219), Expect = 1.052e-17
Identity = 45/124 (36.29%), Postives = 62/124 (50.00%), Query Frame = 0 
Query: 1198 CSSTKYGCEHFCITLLHGGPRCMCRNGYQLALDGQHCLYEGECEPKAHGCDQACKFVTDGFQCQCRSGYVLKKTAYKSSCQDLDECAMDMHSCSHGCLNTPGSYVCQCPGGYQLGTDRLTCQLI 1321
            C+   + CE  C+ +  G   C C +GY LA DG+ C+    C  + HGC+  C      + CQC  G+ L     K +C  +D CA   H C H C+NT  SY C C  G+ L  D+ TC+ I
Sbjct:  283 CAMEDHNCEQLCVNVP-GSFVCQCYSGYALAEDGKRCVAVDYCASENHGCEHECVNADGSYLCQCHEGFALNPD--KKTCTKIDYCASSNHGCQHECVNTDDSYSCHCLKGFTLNPDKKTCRRI 403

HSP 3 Score: 85.1149 bits (209), Expect = 1.560e-16
Identity = 43/121 (35.54%), Postives = 62/121 (51.24%), Query Frame = 0 
Query: 1198 CSSTKYGCEHFCITLLHGGPRCMCRNGYQLALDGQHCLYEGECEPKAHGCDQACKFVTDGFQCQCRSGYVLKKTAYKSSCQDLDECAMDMHSCSHGCLNTPGSYVCQCPGGYQLGTDRLTC 1318
            C+  K GCEH C+ +      C C  GY L  +G+ C     C  + HGC+Q C    D F CQC  G+++ +     +C  +D C +  H C + C+N   S+ CQCP G+ L +D  TC
Sbjct:  406 CALNKPGCEHECVNM-EESYYCRCHRGYTLDPNGKTCSRVDHCAQQDHGCEQLCLNTEDSFVCQCSEGFLINEDL--KTCSRVDYCLLSDHGCEYSCVNMDRSFACQCPEGHVLRSDGKTC 523
The following BLAST results are available for this feature:
BLAST of TCONS_00000040-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MATN21.337e-1940.32Matrilin-2 OS=Homo sapiens GN=MATN2 PE=1 SV=4[more]
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