XLOC_042849 (gene) - C. hemisphaerica

Overview
NameXLOC_042849
Unique NameXLOC_042849
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_487:45173..48487+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042849 ID=XLOC_042849|Name=XLOC_042849|organism=Clytia hemisphaerica|type=gene|length=3315bp|location=Sequence derived from alignment at scaffold_487:45173..48487+ (Clytia hemisphaerica)
AATTATGAGAAAATAGGGATATGTCTAATAATATACTTTCAAAGTTCGAG
ATGCtcaaaatgatataaaaagGCCATCTTaaatgaaaaacaccattcAC
TTTTCACAAGCATCTCAAAGCTTAAAACAAGTGAACAAATAAAGCAAACA
ACTTTCCTGTGCAATCAAACAATCATGGGCAAAACAACTCTGGCTTTCTT
GGCTCTCGCCATCTTTGCTGCAACTTGCGTCGACGCTGGTTGCCGACACC
CTACTTTCCCTGAGGAATTTTTGTGGAGCTTCAAAGGACGTATCCCCAAG
ATGAACTGCGTCAAGGTGATTGAACCATCTGATCCTAAATGGAAGAATGG
GGACAACTTCTTGTGTCATGTTAGAGAGCATGGACGAATCTGTAACACCG
GGATCCGCTGGTCATACCGTGGTATgtaaacccagctggcacacaacgtt
gtttcaacgttcatctaacgttatggggacgttgtgaacattaaataaac
gttgaaagaacgttgtgtgccagctgcgCATGTTTATGAATTGTTTTTGT
ACTGTTTTTACTCAATATTTTTCTGTCTAACTATTTCATTGAGAAAATAG
GTGCACGAAGATCGTTTTAAAATGTGATAAATACTAATCCGAATCGGGTT
CATGTTAGTTAGTCCAAAATGAACAGAAAATGTCCTACTGtaaaatttgg
caaagatttcgtccccggtgggaaaataccatggaatttcagccccactg
agaatttgactttattttcatccccattcgagttccaatgtttgaaaatt
gcactccaaaaccatcccacttgattttttaaccttggaataatctatcc
ccattgagatttcaataggaatttttatccccactgaggaaaaactTCAC
tgaggctgtgagacagggggcgctgttttttaattgaaaattctGTCGGA
TGCACAATCGATACTTCTGACAGAGTTGAATAAAAATTAGTTATGAGTTA
GGTTCAAAGCTTATTATTATAAATAAGGACTAATGGGTTCTTTTTAATAG
CGAACTTTCCAAGAATCAAACTCTTTACAGCTTTTTTCAGTAAAGTCAAA
TTCAAGTCTGTCGGACGCACGCGATAGAAAATggacttcaaaatttttga
gggCAAATCCTAATTCTATCGAAAGTACTAGGCCTACAAACTTGAACTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtc
aaaaaaatcactttttggcAGGTACACTGTAGTCACCGACTCACAGAGGC
GATTTGCATGATCGGCGAAGTCTCGTGGCGAGTTGACAACAATTCCTAAC
GATTTGACCTCTCgaaagactttattttttatCGTTCCACCAACTCCATC
CATAGGGCCTTTGCCATGAGAGGCCTCGTTGTAGTGCCACTCTATCAGCT
TATCAGGATGCAGTTTAGGTAGCAGTGCGAATTTGAACCGCGAGCAAAAT
CGCGACGAACACCCATCACTCCACAAATACACCTTCTTCAAAGTGTATCG
AAGTGGCAGCCGTTCCTCGACACAATCGATGACCTTTGAAACGCAAGTGA
ATGATGCAATGCGTGAGTGATCGTTTGTTTCACTGACAATTGTCAGTGGA
ACCTTCTCGAGGTCAGAAGAATCGTTGTTAAGTTaagttttgagtgtatt
ttgtTGTTAATTAACTTATCTGTCGGAcgcacaaatatcttttttcagat
tcgcaaaaaaaaaagtcattttcctGAAGATAATAGTTTAATAATATAAT
TAATAATAGAAAGTACCTAAAGCCTTAAACAAATTCGGGGATCCAAATAT
TggttaaatttaattttcctcTTGTTTTAATTATATTGAACTTATCTGTC
GGACGCACAGCTAAAATGGATAGAGCTAGTACTTCCATCTCGGAAGCAAG
AGCTTCATAATTTTATCGGTTTACGATAAGACTCCCTAAAAGTTGATAGT
TTACAGGCTATCGTCAATAGTCTATacattgtttttctaaaaaaaaaaaa
atgctatCATAAATCTGTCGGACGCACAAAATAAAGTTTATGAAGTTGTC
AAAGTAGCTATTGAGATCTAAATAAGCTTATTTTGCTATTTTATCAAAAC
CTCATATGAAGTTTGCATAGTTTCTGCAATTGAAACGACTTTTTAACCAT
GCGAGGGGGGCATTATTGCATAAAATGTTTGTGCGTCCAACAGACAGATT
TTCAATGATCTCCTCGTTCAAATCGTTGATAAGaatactgaaaaataaaa
attttaagcaaTCTTTGTAGACACCAAACAAATTCGGTGTTAAGGAACGA
CTTTAGCTCGGAAATTGCTGCATtatcttgattttaaaaattgacgTTGA
TGGTTACCAATTAAAAAACAGCACCAGGGGTGTTTATTGGCTTTTATTGA
CCATTTATGAACTCTTTATTCCCATCCTTAGGTGCGATCAAGAACATGAG
ATGCAGCCGTGTCAACGAACCATCAGAACCCAAAGGATACCACTGGGGAG
ATAACTTTCTGTGTGTTCCCAAGAACTCTCCATACCATTTCAAATTCTAC
AACTACAGACCCAAGATGACCAGAAACTGCGTTCAAATGACCGAGCCATC
TGACCCAAATACATGGAAAGATAATTTCCTTTGCCTCAAAGATCTCTAAA
cgaaaatttttaagaattaaTTTCATCTGATATGATTGTCTTTCAAAGGG
TCATcaagtttgtaaattttctgAGCAGAGGAAAACTTGGATGGTTTGTT
TTACTGCTTTCCTTGTAGTAATAAGTTAGGACTTTAATTAAGAACGCAAC
TATAGTTTGAAAGAATTTGACAATTTGTATCTATCATGGCTGTTTTCGAA
AGTTTAgacaaaaagattttgattttcaaagaagGCAGCCCAACGAGATG
ATCGTTTTTAAGACAATCATTGAATTTTGAGTTATAATTTATCGGAAATT
GTAAGATTTTTAgagataaaattgaaataaaatatttagtCAAAGAAAGA
CTAATTATACCTCCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068690TCONS_00068690Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068690-proteinTCONS_00068690-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_487supercontigscaffold_487:45173..48487 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04	0.09	0	0	0	0.05	911.44	941.31	5327.98	3039.56	4359.57	6227.22	0.3	0.25	0.03	0.03	0.74	0.07	12.46	0.4	0.04	0	0	0.05	0	0	0	0	0	0