XLOC_037549 (gene) - C. hemisphaerica

Overview
NameXLOC_037549
Unique NameXLOC_037549
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_330:174011..179743+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037549 ID=XLOC_037549|Name=XLOC_037549|organism=Clytia hemisphaerica|type=gene|length=5733bp|location=Sequence derived from alignment at scaffold_330:174011..179743+ (Clytia hemisphaerica)
ttcagacattaaaataaatttaatagaAGAATAATAACACAtacaaaaat
ggcaaaatgtttggatcaatgatttcaaaaataagaCAAACTTCATTGCT
GCCTCAACGAACACAACAACTGACTTAGAGAGAAAAACCACACACCTCGT
CATGGAAATTGACGCTACTCAAGCGCTCGATTTGAACGTTacggaagaag
aagaagaaaatgaaaggaAGCAGGTTACCTGAGcgtcaaaaatcattttt
tcatataGGAGAactattatatttttcttttgacttttgTTGAAACTACA
GGCGTAGCATGTCGagtttttcaaattattcttaCTCAGTTTTGAATTAT
CTTTCTACGATGTATCCTTCTATGAGTATTATCAGTTACTTCCAGTTTTT
TATTGCTCAAAATATTTGATCATTCAAGACTTGACATTTTTTCTCTCCCA
AGGTTGGCAAGCTCATTACGGAACATCATAAAGAAATGCCCTCTAccgaa
tttgaaatttatcaagGTGTGATCACTCTCTTAGTTTTCAagtgtttctt
ttcactctGTCATTAATTTTGTAAAGTATGAATTGGAGGATGATTTTAGC
TTGTGTTTCTGTTTTTTCTTATGTAtcaaataatttcaatattATTTACC
TAATAATAATCTAAAGAATTACATTCTTCTCAATCCATGTTTCTCATTTC
ATCATAGGACACAACATCGTTGGTCGCGATGAAAAATCCGAAGTAAGAGT
TACAGTCAAGGTACACATAACTATTTGTTGTTTTATTCAATAACTCTTTT
CGATTCACTGCTATAAAGCTTGGCAATTTTATTTTCTTCGTGAATAAGTT
TCCTTCAACTGTTTGTCGCTTAACCGTTATTACATCCAATTGAATTTCAA
GATACTTAGACTTTACTGCTTGATTCTGAGCTATTTGGAATTTAGAAAGG
CTTTGATTATGAACGGTGGATTTCCTTATATCCAGTCCTCTCTCATTTAC
TTTCAGTCGCTTTCGAAGAAGCACGCGTGTATAGAAACATCCCTTGATGG
CTCCATCattatttatgattttgataGCCGTAATAAAACAAGGAAAGAAA
AGGTTTGTACGATATTTTATACCTTATAAGAaagttttttacaattttgc
TATGGCGAGTACGGAATCGAATGGTgccttgatttttgatttcaattctA
AAACTTTGTCTTTAGACAGCTTTGAAACCATACGTGCGATACGAACTCAA
ACACAATGATCAAGTGACGTTCGGAAATCTCCACGCAAAGTTCATTCATC
TCGAACAAGAACAGGTATCAATCTAATATGTCAATGATATTGCTCTTCGA
ATTTCATAATAATttcaatttgtattttatttaaaGGCGAACCTTTGTAT
CATCAGTATCATCTTTACCAGAGCAAAATTATACAGTTACAATACAATTA
CAATTCTAACGttttagataaaaataaaacaatctatTGCTCTAGTGAAG
CCGCCAGAAAATAGAATATGTAGATGGCATTAATTCTGAATTGGTTAACC
ATAGCATCCTTCATTGTTTCAGCGGCAAGATGACAGTGATGCCACAGGCT
CCATCACTGCTTCAGAAACAGAATCAGAAGcagaacaacaacaaccacca
cCACCACAACAACACAACCACGAGAGAGATCTGGGGAAAGTGGATGACAg
tgatgatgacgatgatgatgatgagaaCAGTCCTTCCATCTTCACCACGA
ATACAGCAGGCCAAGTGAACAACAATGCTTTGGTGAAAAGTGATGAATTG
AACTCGTCGGATATCGTGTTGCCCACACAAAAATATGCTTCGGAAAATCA
AGATGGTATGGTTTGATTGATGGTCTAAAAAGacattattttttattgtt
aactggttactttttcgaagcgggctacacgggcTACACGGCTCGCAAGC
tcgtcgttacttgacctcgggcaatatttctcagtacagcctttacaaac
cggtcattattgtattaatgttCACCGattctgttttttcttttgaatga
tttttagcCTTGCTAAAATTTCTATTACTCTGGCTATTTTTAAGGTGCTA
GTTTTTGAGTATCTTCAAAACTGCCCAGGCATTTGTGCTCTGCCCAAGCA
GTCATTTCAAAGTATAGCTGTTCATCATACATCACATTTTTTCTCCATCA
CAGAGGCGTACGCCAAAGACACAGACGAAGAAGACTCGGAGAACGAGGGA
GGAAAACAAGAAAACTCTGAAGAAGGGAGAAATNGAAGAGTCAGAGAACG
AGGGAGGAGAACAAGAAAACTCCGAAGAAGCGAGAAACAAAAGACTCACT
GTGATTGGACAAACACCAGGTAATCAACTTTGTTCGATTGAGACTTAAAA
CGCTCAACGTTTTGTGTGACTTAAACAAGTATAAGGTCTTAAAGCACACG
AGCGTGGGAAAGTggtaaattttttctttcttttgtttgaaaatgttttc
taaGCAAAAATGGTATGAGattttaaatgataaatttttcagcGCGCAAC
GCTCTTCcgtttgttggacctaccccggtggggtggaggtcctataaatt
aacccgtgttcgttcgttcgttagttagtgtgttagttaccagcttttct
cgagattggaacattagttttttctgatttttggcacaaaggtgcatgac
cacAAACCCTccaatgtgacggagcccgattttcgaaaaaaaaattttta
aggcaaatttgggccaaaaaacggcttaaaaacgggttttttggactttg
taaaaaattggatcattaattttttctgatttttagcatgaaagtNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatcttt
ttcaatagtgttgatagtttctctcaatagatatgctttcattttcttta
ttttttgtattttgaccagttatgtcttatgtgtttcattgtttcagttc
actgattagtttgataaccaggtaggtccataaaagtatcgcttgtttca
CTTGAATCGggataaaatattggaaacagATAGAAATCTTTTCTACTCAT
GCATGATTTCCACTTCACTACTTCAGGTGTCAAGCTAAGGAATGAAGTAT
TACCAGAGAGTGATTTGGAGTTGACCATTGGAACACCGAAAGGAAAAAGC
ACTCAACCCAATGAAGAGAACGATGAAGGTATTGCGTTGTAGAGGATGGA
GAAAGGGTCAAACAATTCTTTCGCAACgaaatcttttcatttttgtttaa
aaaaagttataaagtttttataacCAAACCACCCTGTTTGTTTTTACTGT
AGCACATGCGACTTCAGGTAACCTATCTGGTTTGAGGTGTTGTCGTATCA
GTCGTTGTAACCTTCAGAATAAAGtttaatattttgtttgtaGATGCTAC
ATGttgcttataagcatatgaaggctcagatttgcagaattcctaagcat
aacataagcatatatgtcagcctgaaatatttttcaagttgtcatttttt
atctttttaaaaaggtttggtagaggtcaagtaaacaatagacattccac
ggctagctaaattccactgctcccaaaatctgtacaaatttttacaaaat
ttctgaaatttcactaaaaacttggctcggggtgaatcaaaccatataat
aagcatactctcgggtacctaatagccggggggtttggaataagcagggg
ggttggaaaaaatctcgaaaatNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaat
taattagcggccccccccccccggctattaagtacccgagagtattaaGC
TCTGccgcctggatgctttgagaacttaagcatacacgagcctgacgaat
gggcatacacttgcttacaaaaaaacaacatgtattTTTGAAACAGAGCA
ACAGCTAGCACCAGCTTTACAAAACCAGGTGAAGGTAAAGGTTACCCAAA
GCAAAGTGGAAAAACAGCACATCACATTTTGTTCCTGTTTGTTCAAAAGT
TAGATTTGTTTCATTAAATCTTTTCCCTTGTTTCAGAGGAGACACCAACT
GTCGACCACAAATTCAAATTGTTCCTTGAAGACTCCTCCGATGACGAAGG
GCCAAGCAATGTACAAAATGGACGTCCTCCTCTTCAAGATCAATTGTCAT
GTGATCTTTCAGCTGCTCTTGCTGATGATGAGAGGTGATGATGATGGACA
CGTGCAACTTTCTTTTGAATATGACGAATTTAAATTGTCTTCATACTCAT
GTATATCCGACTTTTTTTGCAACTTCGGAATTGTTATCTAGAACGAAGAT
GAGAGATTCTATGTTGAATAACTACAAAATACGTTCTTTTAATGTCCAAT
GTAAGAAAAGAACTTTTCCAAGAGTGGGCTTAACCCTAAAGAGTGTTATG
AAAGTGCTGGGGCTAAAAACAGACAACCGCTTTGGGGATTTAATACTTGG
CGTAGCTACATTCTCATCACTTAGACCGAGgctaaatattttttcaattt
ctgggCACATAACTCAAACCTCACACTAAGCACTTTAGGAATTCATTTTT
TGTACATAAATGTTTTAGATTTGCAGACACACTGCCCGTCGACAGTAATC
AACAACAATCGCCCAATGGCAGTGCAAGCATGGTGTGCTCTAAAGAAGGC
ACCATTACCAAACTGCTTACCAATGAATATGCTGACACCTTGCTCATCGA
AAAAAGTGAGTTTCGGCTTATATCTTGGAACTTTATTGCCGTCTCTAGCA
AACTCTTTGCTTATATTATGATTGAGATTATTTTTTACCACTCATGGgta
aaatatcaaccaaccgATTGCATTGAAACCAGAAAGGTTAACTGATGGAT
AGGTGACCAAGCTTTTTCAAACTTCACCAAGAGGCTAAATGCCAAACTAT
AACTACTATATAGTTTTTAGGTAAATTAGGTTTTGTCAAATAAAGATTTT
CGCGTGAGACACAAAATTACAAGGAAAATGTGCTGCGAAAATTTCACCAG
TACACTATTAAATTTCCGAATTGTCTTGTTTGTCACGTTCAAAACGTTTT
TGAGTTGTGCTCTTTTTCTTTGTGTAGAGAACG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00059671TCONS_00059671Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00059671-proteinTCONS_00059671-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:174011..179743 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.35	5.24	2.37	2.09	30.68	22.76	10.58	11.55	5.32	7.77	6.15	4.39	3.58	4.51	5.04	6.96	7.94	8.11	1.45	2.67	3.55	3.31	5.99	6.84	9.1	9.28	2.29	0.93	5.7	7.52