XLOC_029690 (gene) - C. hemisphaerica

Overview
NameXLOC_029690
Unique NameXLOC_029690
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_113:386384..390274+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029690 ID=XLOC_029690|Name=XLOC_029690|organism=Clytia hemisphaerica|type=gene|length=3891bp|location=Sequence derived from alignment at scaffold_113:386384..390274+ (Clytia hemisphaerica)
CAAAAATAAAGTTGGAAAATATATATGGGATAAAGTAAAGAAGAGAAAAC
TGAGAGAAATAGGGAACACGAAATTATCTCATAATATTGACTGGACAAAT
CCCTTTTTCacgttttgttttatttttccatcATCGCCTTATAATTTTAT
ATATTTGAGTTGTCTCGATTATTTTCAAGATAAGACATCAAAAAAGtatt
aaaacattttgaatcaacgagacaaaacaaaaaatgatcgGTGAAAAACA
GAGGAGTACTTCAAcatcaatgaaaaatttgagtcggaaattttcaaact
ctgCAATCACAGTTTGTAATAATGTAATGGAGAGAAGCCGAGTCAGCAAT
TTTAAAAGGACTTTTTCATTGAGGAATATTTTCCACCACCAATCAACACA
TGGACATAGTAAATCATCAACGAGGAATAATTCATCATCTAACCATGGGT
TCACGTTCAAACGAACACCTTCTAGAAAATTGGATATTTATTTCCCATTC
ATTAGAGGGTAAGTAAGACGTTACCCCTTGCTTTGAgttttgattgattg
gttggctttgtaaatttgtttaccaATTGACCAGGGGAGTGGAAGCTCAC
TCGTCATGCGCATATGTGATGCAGGAGaataatcaaaatggtagaGCTAA
TTGAACACTGACTTGTTACTAAGGAGCAAGCTTTTTGTGTTTTTCGGTCC
TACTAGAAACAGGTCATTTTTCATGCTTTTTAAACGTCTGCTTATTGGAT
GCTGCCCCTAGTTTTTACAATGGTGAAAACTTTTAAAGGCTtgtttatgg
aaaaaattttgcCTGCCAGCGAACGCCGCCTTGGCCTTCTAGATTATGGC
CTGGGACAGGTTCTTGATTTTTAATAATCAATCATACAATAAATAAAGCA
CTGCCAAAATCGGTGAAGGATTCtttataaaagaaacaaaatctTTGTTC
ATGTTGTGTTCAAAAAGCGCCGCTCTAAAGGTCATGGCTTGAAATCGCTG
TTGGGAACTCTCAAATATTTATATTCGCTCAattagaaagatttttcatt
cctTTTTCGCATGCGTTGGGTTTCTTTCAACAAAAGGATTTTAGCTCTTT
TTTTTTCCGTGCTTCGAGATTTTCATTAATTAAACTGTGAGTAAGAAGAA
GAATTTTTACGCaataaaacatttctttttccGAAAATCACAGCGCAGGA
CTAACATAAAGACACCGTTTACACgcaattttgatcaaaaaattttcttc
attttcctcCAATAGAAATTCTTCATAGTATTCAATTGCGTAATCCGGAT
TTGAAGCAGAAAAGGATCTGTTGTAAAAATCGGATTACACGAGCCTAAAG
TATCACCGTACTATTTTAGCCTCATCATGAATATATTGATTTTAGTTCGA
AAAAGAGAATGAAAATCAGACATTTATGATCTGTTCATTAATTGATCAAT
GAAATAATCAAACAACCGCGTTACCGCAATCTCTTTTGTCTGTCTCTATT
TGTAAACCGTGAAAGAATTTTGCgtaatgatttcaaaaaaaaaatggttc
ACTTCTTTTATTCCTAATTTTCAGGCTTCACTTATATCATTTCTCAACAA
TCTAACAATATGTTatgctcttaaaatgttctaacgCGATTTGAAGGTTC
CCTGGTCAGTTTCCCTCATTTCATACACAAACGCTGATCTAACTAAGTTT
TGATtttcgtgtattttacagaccagacgtCAAACCACCACGTAACGAAC
GTCGAACGTTGAAACTTCAGAAAACAGAAGATGAAGGATTTGGATTCTGG
TTACAGGTAAGTGTCCCCATGACAACCcatgtttatgtttattttttggT
GGCCATTATGAATTTATGAATCATTGCATGATTGTTTTAACGCATGAATT
CGGTCATGAATATTAATACATTGCGTGAATGTGAAACGGAATTTTCAACA
GGCGCCGATAGATGCTCCATTCATCGATTTGAATGAATTTACTTTGTTTT
ACTTCAATGTTGAGtctgtgttttttgttttgttgttatgGTGATAAAGC
AATGACATAAAGCTGTGTTTAGCCTGTCTTTCTCAATCCGTTCTTATTAA
TTGGCTGTACAATAGACACTTGATAATGTCATTAACTCAATTTTTAAGTT
CTTAATACTCTCATATTGATCTTAATAAGAAGTCAGCCTAGTGCTAATTA
AACTGCGTCAAAAATACGAAAGACGTTAAAAAGAAAGACGTTATTATTGT
CCATATTCCGACCAATACTTCAAGTAATCGTTTTTTCCCTTTTCAGACTT
ACGCTTTCCCCAAGAATGGAGGAGAAGCTCAAAAACGGACTTTTGTCCGC
TACGTGGAAGACGAGGGAGCAGCTTATATGGCAGGTCTTCGTGAAGGAGA
CATCATCGTAGAGGTGGGAGAACAAAACGTGGAACAAATGGACCATATAA
AAATCGTGCAATTGATCACTGAAGAGAAAACTGAATTAAGGTACTTCGTT
TTTTGTTCTTGGGGAAATTCCCAATGTACTGTAATCTGTCACCACAAGTA
AATTATAAACGACTTGATATTGGTTAAATGAGATTCCTCACGACAACTTA
CTTTCTAACCTACTTTGATGTTTGGATGTTTCacataaaatataattttt
ggcGGATTCACTGTGATCCTTATCTGAGAAATTAAATTGAACTTTTCTAC
GTCTATGTTGTCATAGTTACGGTAACGATTTGTTTGGCCCTTTTAGATTG
GTGGTGAAATTTATCGATGCTGTCCGACGTGTGGAGCTTGCTGTCCGATT
GAAGAAAAAGCAGACGAAATTAAAGACAAAAGAAGAAGAGTTAATTCGCA
TTAAACAACAAGAGTACGATTTGTTAAATGGAAGTAAGTCACCCTTCTCA
TTTCACTTTCCAACTTCAACTCATGCTGAATTTTCTTACGTATAAATTGG
TATGGCAGGGAGATATGTTTTTAAGGTTTTTGACATGGTGATACTGTCAA
AAGAATAGACACTTTGCAAATGCTCACATTCTCTTTGATTTTCGTGTGAA
GTTGCtcctaattcatgatatgcatcattgcATTGTCTTCCacgctgatt
ggttgaaagtaacgttATTGACTGATTTAATGTCAGAAGGCATTGCAATT
GTGATTATCATGAATAAATGTAGTGAACTATTTAGCGTTAAAAAGCTCTC
AATAAAGTTACTTATAAAGCAATACATTTAAACAAATTCTTCGTATCTTT
CTTCTTCCAGTAATAACATACGAACCTTGTGGCTCCCCTAAGTCAGAGGA
CGGTGACGAAATATCTCTCCACACTTCAACAGAATCCGAAATCTCATCCA
TTTCATCGACACAATCGGATGAACTGACCGTCCGAACCAGCAAATTCAAT
AAACGTTCATCTCGCGTATTGGATTCAATAAAAGAACTCAATTGTAACGA
TAATGTTTCAGGTTATTCAATATCAGATTGGAATAATGTTTCTAAAACGA
CTGATGATGAATTGCTAAGTTTATACTGTGACAAAATGGACTACCATAAT
AGCTTACCAAGAGGTTGCCCTAAAAACTTAAAACGTGGAGACAGTATGCC
AGCACATAAATATCGTTCTTTACCTCGTAAACGAATCGTAGACACTTCAT
CGGAAAGTATATCAAATTATACTCGAGAATATGCACTCGATTATTCGAAC
GAACAATTCGATTCATTCGATTTTGATGACGGTGAATCGAGTGACGATTG
TTCGTCTTCTCGATCCAGCATCGGAGGAACCGTTTTTCAAAACCTCGATC
GAGCTCCCAGACGGAATCGACCGAAATcgtacaaaatggcaatgcacTCT
TTGAAACATTTAGAGGGTGATGTGGCGGAGCTGTAATAAAN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00046513TCONS_00046513Clytia hemisphaericatranscript
TCONS_00046514TCONS_00046514Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00046513-proteinTCONS_00046513-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_113supercontigscaffold_113:386384..390274 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.67	3.76	2.2	1.85	21.38	15.58	55.22	57.15	18.32	25.87	25.68	17.08	33.84	34.34	20.15	22.87	60.82	59.28	54.66	49.43	38.89	38.6	24.05	27.63	45.12	45.92	45.94	39.07	21.2	22.53