XLOC_029593 (gene) - C. hemisphaerica

Overview
NameXLOC_029593
Unique NameXLOC_029593
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_109:42319..48661+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029593 ID=XLOC_029593|Name=XLOC_029593|organism=Clytia hemisphaerica|type=gene|length=6343bp|location=Sequence derived from alignment at scaffold_109:42319..48661+ (Clytia hemisphaerica)
AGAGGCTGTCATGTATAATTTGCGAACATCGGTGGCTGGTATAGTAAGAA TATGGAGTCATGTTACTGGTGGTAGTGTGGGCGATCACCATGGAAGGTTT GATACTGCTCCGTTATTGCTTAAAGAAAATCAATGGCAAGTTGGAGATAA GGCAGTGTTAGTGGACTCATCGATGCCGAGTATCGGTAAGTGGATAAGTA AACCTGGGAGTAAAGTCTACTTATATAGCCAAAGTCTATAGGCCTCTATA TTGATGGAAAGAAAGTCACAATTGACCTAGACTAGCAATCTATAATCTTA TGATCAATTATGTCAGACGGTTGGAATAGGGCGGATGtttatttgttaaa tgcatCGGAAAGGGCGGGAAAGTTTGTGAGAGCATAGTTTGTAGTAGGGT TATAACCCCCCCAGGCTTCTTTCATCCCCCTCATTTTTACCTATCCCTTC TTCTGTAATGAAATGCTTACCCCTATAATTTCACAGAAAACAAacacaga ctacggctattaatatatagatagtAACTTTTTTCCTTTAGAGGGGGCAT CGGCTTCGGATGCAGGTATATCATGTCGACGGTTGAAAGAGCGACATCCG CACTACAGGAGTGGTCATTACTGGGTGAAGTACGCTTTAAGTGAGGGAGT GGCTAGACAATGGTGTGATATGGATGACGGCAAAGGCTGGATGGTGATAG GTAGGTACCCTTCGCTTAACCaacaaaatacatgtttttttataagcaga acacttataagcatatgaaggctcaaaTTTGCataattcctaagcataac ataagcatatatatCAGCCTgacatatttttcaagttgtcattttttatc tgtttaaaaaaggtttggtagaggtcaagttaaaatagacattccacggc tagctacattccatcGCTcccaaatctgaacaaatttttacaaaatttct gaaaattcactaaaaacttgactaagcatgattcataaacatataataag cataagctatgcctggatgcAGTAGCGgtctggcttaattttcttggtgg tgcaagctatgaaattggcgcccctggtgtttttgtccttatttgcgccc tccaccattaagtgaaaataatAAACTGCAAGatcagtgactggttgaaa gtaacgcccggaatatCTGAGttaacaaatttttatttatacgaaggtgg tggtaatgataacttgatatctatttccttgttatttcctgTCTCATGTT CGAACCCATAAGATGTTAATGCGTTGGTTTGATGTCGCGGATGCCGATAT CTTTGAGCAGATcctcaatttcctttttgtccTCTTCTTAATCTTCTTCT TTCGTGTCTTCAGCTCAAAGAGTCCATGAattatgatgttttttcttctt gattcaATGTCTCGTTTTTCTCTCCTCTCCTCtcctcttctttttgttcc gcaacaacagatttaagattttccttGTGTGCTTTGGTTATATCAGCGTA GGTTTTACGGGATGACtctttcataaaatcttttgtctgttGTATCTCTT CTTTTATCATTATCCTTGTTTTGTCTTCTAAGTCGCTCATCTTTAGTTAG TGTTAGCATTGTCTCGATGTCGTTGTTGATGACTTCTCGGTTTTTGGTCA gttcttttttgagttttttgatttcGTCGTCTTTCTTAGAAATCTGCTTT TGCATCATAtagtttcgatcaatctctcattttggggtgagcatcctctt taacccctaGTGGATACACACACACTTATCTCTTGCTTAGACTTTTCGCA gttcaatgttgatagtagttttgaaaaaaatcgtaaaataaaacgaagcg ccgcaggcgaaaaaatatttacattgcacttatataaggcgctaaaaacg tgtcaaagggcgccaaatcgcccaaccaaacatcaaaaaacaattttggc gcccccttgaaaagcttttttggcgcccctctcaggtctttctgggtggt gcactgcacaccctgcaccccctgccaggccgccactgcctggatgcttt gagaacttaagcatacacgagtcTGACCAAGGAGCATACACTTGCTTTTT ATTAGGAACTACCtatatttggaaattttgaaatacatgAAACGTTTCAA Agaacacctccttctcacagacccactgggaacccttaccactggaaaaa ttggcaaaaatatcgtccctagTGGAAAAtcatactctaatttttgtctg ACTGAAAATAACCGGATAATCAAATCCTCACTGTAaattattgtgctatt ttttccatccctacTAAATTTTCGGGCTAGAGAACAATGGAATTTAAGTC CCTAGCCATAAAAAAacaggaatatcaatccccatcgaggtTTGgaccgt tatttttacccccactggctgataaaatcccaccgtgtctgtgagaaggg ggtgtcaaaGAGACTTTTTTCTCAATCAAAATTACATCCTGTATTTGTAA GATTTATCTCTggatttaaaaaagaacgaTTTATATGAACAAATATCTGC AGCATTTACAGTAGCGAAGTAGCAAAAGATCTTTTACTGAagcctatgaa ataggctaattagGATATCAGGTCTGGcattaccgtgaaaagcacaggcc aaaatcatatattgacctgtgccgaccaattcagtttctattcagcgcgc aatcaacgcagagaaaagtaaccatgacgacaatccaagataTTGGataa agttcaaagttgatatttttattcccgtttttgaaaacacaactcaaaaa atgtcatcaatgctttttaaaaacagtcagtgatagagaatcattacatt tgtctattatttcgattctattttaaagtaacattaccataattaataat ttagtaattactgttatacatttgggaatcattcTTTTGAAAGGAACtta tttcaattacacttggaggtttctggggaattcgtcacTAGTAAACATGT ATATTGATACAGTCTgttagacattaatatggtaatatttgctcttcatc tttgattctttctacagtgattagattgacacatgcgcgataaaatttct attattggtcttcagaggttgatatattttttgaaaactcaacctctgat actcagggtaggctGGCATATTACCAAACAGGGATCACCTGATGGGCAAA GTAATCGTTACGTTTATATGTAGACTTAAGTAGACATTGAActcttgtta ttattattattctagGTCATGTCAAACTCGACCCGAATGTGGTGACGAGT GTGGGAAGTGCGATAGAACAACATCCTAATTTGATTACAGGCGACATCTT AACAACTAATGTTTTGTTCAGTGTATTCGGACTGACAAACACGCAGGCTT TCAATGAGGTCACCGAGGTGCGTATTCGTTGCTTTAAACAGTGGCATGGA CGCACACTTGATGTGGTGGTTAAAGAAGAGTCCTTTGCACGAAGGTATGC TTTTAGTTTAGACAGCTAACTTTCTACTCTACTTATGCTTATGTTTTTTT AGCAACTCATGGTTGCTGCTGCTACTTAAGCTAGATATCGACAGGTTTTG GTTGGAAAAGTTGACTTTAAtaaaccttttcgaccgtagccgcgtagcgg gcatttttttgtccgttttaccaccctaaaactgtcccagtctttttttc gcacctctAAAGATAAtagaaaaaagtctaaaaaaggattggatcgagtt tagggtggtaaaaagtGGTACGCGCCTGGGTGTATAGGCTAAGTTTCTCG GTTCTGAGACTAATCTATAGCCCTATAGAGTAGGCAAAAACTCGCCAAAC AAAACCTTTGTATGGAAAAGAACAGAGATCTTCGAATTTTAGACAGCCGA CTAGATGGTGATGGTATTGGCTTTCTAAATTAAGGCTAATGATTATTTCA TCATACAATCAGACGAGGAAGCATGATCTAtgatatttgaaattttaaac ccCTTAAAACTTTAAACGCAAAATGCTGACAATATGCTAAGTTATACGAT CTTATAAAGAATATTCTCACCTGAGCAGATGATTTGCTAGATACTTTAAG GGCGGAGAGTTTcgtgggcagaaagtttcgcgaagtcaaaaagtcgcgaa atttagcgaatttaagtttcgcgaattatggttttagcagaaatttcaca gatagaactttcacgaattcatataaaatttaccttttttggtaataaaa ACTCATGAAACtcgcaaaaatttagcaaacagcacaaaactgagtaggaa agtttatttttcgcaaaaaagactttcgcgtttttcaggtttaatttctt acctatGGCAAAAACTTTTGCGAAAAGtatcaaaatcgcgaaaaaacgcg aaagtttctgcccgcgaaagtttctgcccttaaagtagacCAAGCATTTG AAAGTTCCAATAAAAACTTTGGGGGCGAAATCTCATCATTAAGATCTtct tcaaagtaaaaaaaagtatcaTATTTAGAGTGGTCTAGGACGAACGGGGA AGTTCGATAAGTTCTCATTTAAACGAGAACATGATAAAATATTGTTTAGG CGTATGCTGATTGATATTTTGTTGAGATTTATTTAGAAGGGATGGGTACC CGgagggggggcactcaaggtaaataaCCTACCATACATTgtggccctta agggtatattttccatgcttcccaaagtgcactgtacaGGTCGAAACCAG CTAAAATCAGAGaaattgcactataagggtgtaaaatttataataataac cctaacggtgcattttcttgaaaatttgtgACCATTTACAGTCAAAATAT Ggtcaaagtttttcaagaaaatgcaccgtaagggtggatttttttgctta aatatgctcaaattttgcaaaattttgtctgcactgtaagggtccgattt caaaggcctagtTCTGGGCCGCACGTCTGTTCGTTTTttaatcgagtgcc cccccccgatGGGTATTCAGCTTGTTTCACAGGCGTTTAATGACAGCAAA CCTTGATCCTTGCCTTAGCGACCACCTCACCAATAACCGGGAATTTTCat cccgtttcttagtgagttccactttgatgattttcaaaaaatagaagcct ttcaagtcctctgacgcaaattcgatttttttcgctGCTGCAAGAGCTTC GAAAGCTTAAAGTGACGTcgaaaaatcgaatgtttggagcccgaaaaccc gggctcaaaacattcgaaaaggtcacaaagtggaatagacgttaattgcg tagggAAAAAgccgtctagtataggctatccTTGCCTGTACCAAAcgata actttttttttctctaaatacCGTTGAGCcgattgataaaaaattgcGTG TTAGGATATAGGGTTAAACTGTAGGGAACCATTCAGAATGAGAAAATCTT GTTGtgaaattttgttcttttttagagtttttacAAAAGACAATTCACAG TCAAGACCGGGTTTCTATTGCTCACGAAATCCCGGAACACCTAACATTAT GCAATTCCTATCGATGGACAATTCCCTCTTGAAAGACGTCCCTTGTACAG ATGTATTGGGGAATTCATTTATTTGGGGTTATGTATTATACAGAGCAAGT ACCCAATATATCTTTCCTTATTCCACTGAATGTGATGATCGTAATAGATT GGACTTTAATCCCAGTTTCACGGTAGAAGGAGAATGGTGGTTTTATGCCG GTTGATTTTTCAGATGTTGCCAGTCTACATTACTGGGAAAAGAGGTTAAT TTTTATGGAACATACGAATTTCATGAGATTTACTTCATTAAAGACTTGAG TAgacgagaaaatttttttcgcgttggtgcaatgcaacatgctctatccc gccaacctgaaaaaaaaaataagaaagagTATGAGAGAAATACTGTATGA TGGGGAAAAAATTTCTCTTACTTTTGTCCCAGGGATTAAATCTCTTTTGA GTATTTTCTTcgctttttgtcccatgaaacaaaaaaagagaaaccAAGAC AAACCtctttcttgtgttggtgggatggagcatgttgcactGCACCATAA CGCGAAAAATCTTCTcttgtccccaagccttaaaattaacagtttttttt actAATACCGATGGTTTCATGGCATCATTGATGCAAATCATCAGTTGGAT TATTAGAAGGAAAAGCTTAACGAGTTTACGAATGACGAGAATCACAAAAC TTCTGTAAAGCTTTCATCAAAAAGGCGGAAGCGGAATACTTTCCATAAAT ACTTTCAAGTATTACTTTATAATTCGTAAATTCAaacgaaaat
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00046344TCONS_00046344Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00046344-proteinTCONS_00046344-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_109supercontigscaffold_109:42319..48661 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12 1.2 1.4 1.08 1.86 1.48 1.85 1.92 1.14 1.73 2.76 1.47 4.23 5.18 2.47 2.81 2.58 2.23 5.78 7.35 1.64 1.94 1.25 1.39 0.9 0.86 1.82 1.33 1.87 2.27