XLOC_029387 (gene) - C. hemisphaerica

Overview
NameXLOC_029387
Unique NameXLOC_029387
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_105:111717..122297+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_029387 ID=XLOC_029387|Name=XLOC_029387|organism=Clytia hemisphaerica|type=gene|length=10581bp|location=Sequence derived from alignment at scaffold_105:111717..122297+ (Clytia hemisphaerica)
AAAACATATAAAAACAACAGTGGACAAAAGAATGAAGACTGCAAAAAGCC
ACCTTGAACCACAAAAAAGGAGAAACAATCAAATGGACTCTAATTCAAGA
TCATCATCTGATCAAAAGAAGTTTGACaacaaaagattaaaaaaaacatc
tcGTAAAGAAAACCCTTATAAAGCCAATATCGGTGAGTTTTAATCATCCA
TTCTGAAAACCTTTGATAAATAAAACCGACTAAAATTCGATTTCGACTTT
GTATGAAAAACGAAGCATCATTCATGactaaatttgaaagaaaatgtgtt
tagagacatttttttaaagaaaaaaagaaaaattctggAGATAATTGTAT
GGCCAGACAATTTGACAACTTGATTATTGTGATGATTTAAGTTAAGGTCT
GAGGTATTGATTTCCTGTTTCGAATCCCTTCTTCTCCCATGTTCCATTCA
GTTGACATGATTAACAGATTGTCTAAAAGATTTAGATTATAATATTAATT
ATCTAAGTATCCATTCGTATTTTCAGAGCTTCCAGATGCGGATAGTCAGA
AACCTGACTGGCATAAGAATAAAAAAGATGAGATGGAGACGTATTACACA
GCCATTGGAAAAACACCCAAAGAAGAAATGAAAATCACTGAACGACATGT
CACTCCTTTTCTAGGGTAGGGccttctttctttgtttcttacGTCTCCAT
TTTGATCAGATTCACAGGAGTTAttataagaacgtccaaaaGAAGTGTTC
TAAgtcttaagcctaaaaatattcttaaaatgttcttattttcactattt
tgtgagtatttttgtgcgatttcttaagaaatttggtgttttagaaTCCA
TAAAGCctttaaagtgttcttaacttgttcttaatattttggtcattgaA
GCCTTAAATGCGGTTCGCTCTTATAAAACAAAGTGTGCATGTTATTTGCT
TGATTTTTGGACTGAATCTGAAAGATATCCTATTTGCAAGGAAATTCCTT
TCTCAAAGATGTCCTTAAAATTACGAGTGTTATTATGAGAGTTCCAAAAA
TTGTGAGGGTTCCAAAAGTTGTGAGAGTTCCAAAAATTGTGAGGGTTCCA
AAAGTTGTGAGggtttcaaaaattgtgagggTTCCAAAAATTGTGAGGGT
TCCAAAAGTTGTGAGGGTTTCAAAATTGTGAGGGTTCCAAAAGTTGTGAG
GGTTCCAAAAGTTGTGAGggtttcaaaaattgtgagagTTCCAAAAATTG
TGAGGGTTCCAAAAGTTGTgagggtttcaaaaattttgagggtttcaaaa
attgtgagggtttcaaaaattgtgagggTTTCAAAAGTTGTGAGGGTTCC
AAAAATTGTGAGGGTTCCAAAAGTTGTGAGGGTTTCAAAAGTTGTGAGAG
TTCCAAAAATTGTGAGGGTTCCAAAAGTTGTGAGGGTTCCAAGAGTTGTG
AgggtttcaaaagttatgaggGTTTCAAAAGTCGTGAGGGTTCCAAAGAT
TGTGAGGGTTCCAAAAGTTGTGAGGGTTTCAAAAGTTGTGAGggtttcaa
aaattgtgagggTTCCAAAGGTTGTGAGGGTTTCAAAAGTTGTGAGAGTT
CCAAAAATTGTGAGGGTTCCAAAAGTTGTGAGGGttccaaaaatgttgaa
aattttacttttcttaATTTGGCAAGAGAAAAGGCAAACTTTTCGGCCAG
CATACATTaaatttgttcatgaaattTGCTTTACACGTTTACAATTGTTA
AAAAAGAATTCGTTTTAACTTCCAGAGGTTTGAAGACATACATCAAAGAC
ATGCGCATGGAGCCTTTCAAGAAGGAGAAGAAGCCTTCTGAAAAACAATT
TCCATTTGGTTTGAAAGTGGACTTGTCTTCGGACGATAAAAGGAAACTCA
CTGAAGCAGAAAAATTGTTGAAAGCGAAAGGGCGGAGACATGACTGGTGC
AAAGAGTATCTACACACAGGTtagtttttccttctttaaaggtttcattt
ttacataagtgttcccgtttcatatcagcatgaaggtaataaagatagat
ggagagtcaatgtcTTTTGTTCtcttctgatttatcatcggaagcaaaca
gctgtttggttgctttaggaataagatgattaattttgggtatactcgtg
ggaatatttaagatgaatgaaaagacattacatttttaacaagtatattg
aaatataataaatagccttgtcatgaaaaattgaaaaaaacttcacataa
taagcacaatactctaaaattctaggggaagctgcccacataaagccatc
gatagatttaaaatcaTTACGTgcgttacgattaggaaccttgtatcgat
cattttgtcataGTATGAAAAGCactgcccacttagacgtgaagatttta
agataagaaactttcaatgataatgtgatgcgactctcaatgttcacaaa
atgcaagcccaaaaatatatccttacGAAATTAAtttgtaatagttatcg
gacagttgcgagtacaatatgagaaatattttacgagttccgagattttt
ccgtacaatattttccgagcctttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCgcattttaactaagatttctcgcaaaattaagtttttcaaaatcaa
cggaccagcctctttctgttcttataaagttataaattgatgtttttgct
tccaataatggtacatcaaagaaaagccgctttgaatagatttatattag
atttcaacgaccatttagatcattaccaagacgttttctctccatctgta
tctttattaccttcatgatatcagatacatatttcatatcaggacagtgt
taTTAATATATTATGCtaattataagcaaaaaatgttaaattttaaaaac
aaaaccttctgCTGTGACTacaatgagaaaataacaaGGAAAGTATTTTA
TTTGATAATAAAACTAAATGAATATGCATCTTGATATAAGTTACAAAGGT
GAAtagtatatttgaaaaaaaattttagaaagcGCTCCAAAGAGGTTAAA
ATTCAATCCGAAAGTATCTTTTGGAAAACTGTCACACACGACAATTCGCC
GTTGTTGAGATGAATGTTTCGTCGTTTGTTCTCACGTGGTTTACAATAAA
GCAATTAATGCAAATGAGATGAAAAGGACCAGTGGAGATTGTGCAAGTTT
GATACCAAGTGAGTTGGTCACACCAAATAAGGTATCGAAAACGATTTCAC
CATGGCTTTCATAGTCGTACAACTGATTCCATTCATCCTTATCGACGTCA
TATTGATACATATTTGAATTATcacttatgacgtcatcataatgGTAGCG
GTTGACACCACTTGTCGTTCGTCGAACAATGAACTCCGACATCTCTGATA
TCGGAATTAAATAATCCGACATAAAGACACTTCAGTGTCGTTTCTGACGA
CCCGATTTTGATGGAACAGAATCCGCCCCTTGCACGCCACGAATAAGTTT
TACCACCTTTGCCATAACCGAGAACGCATCGATCTAATTTAACACATGAT
ATACTATTAAGGTAAATAGGCACATAAGAGGTATCATCACTAAGGACGCT
GAATTGTTTCCAAGTGGTGCCGAGATCTTTACTGTAGATAAACCATGCAT
TACTGTAGAAGGCAACACACGTGCTTGTTTCTTCATCACCGACGCATGAT
AACCCTCGAATAGCTCCACGATTTGTTGAGAAAACTTTCTTCCATGTCTT
TCCATCGTCTTGAGATAGAATGATACTCCCTTCTCTGCCGCGCTCGTTGT
ATCCCGCTAAGCATGTTCTAGAACCTTCCATGCCAGTAACACATTGTAAG
ACGGTCAACTCGTATATATTATGCTCATTGTGAGGGACAGTGTGAATGTA
TACTGTGGATGTCTCATTGAATGCAGTTGATGTCTTCAAAATACGATCTT
GAAATCCCAAAAGACAGTTGTTTTGATCAAAACAATGAAGGCCTGCTCTC
TTTTGCCAGAAACTTTTAGAAGTTCCTAAAACTACGAATGTATTAAGTTT
CCTCCATGATGTACCTGCATTCGTTGTCTGGAAGACCTGGATGATTCTCG
TGGAAATATGAGCACCAACTGCATAACAAACTTCGTGCGATACACAATGA
CCGACTTTGATATCCAGCCAACCTTTTGGTGGGTTGAATTTCTCCCAAGA
CTTTCCGAAGTCTGATGTGGTGAGAACTGTATTGTCCTGGCCATAAGGTG
ACGAGAAAACGTATGTAGTACCAGCTAACGTGAAACAGCTGCCAAATAGA
GCAAGGAAAAACAACACAGTGCTTGGCATTTTGGTTAATTCTGTTGTAGA
GAGCGCACAAACTGATAATTATGTTCACGAGGTGAACAAAACTGCTTACT
TAAACtgttgacaatttttttctcacaaagagagagagagagacagattt
ttgaaaataatgatttattattgttttgattcagATTGAGTAAACAAAAT
AGCCAGTTTAGTAAGAATAGTCTGGACTAGCGGGGGATCTATGTAATGAT
TTAAAGCTCCAAAGCTTCTTTATTGTGTAGTGTATTCAGAAAGCCTTAGC
AACCtgattactcttaggtgccaaataaacgggggggttggaataaacgg
ggggggggttggaaaattttcaaaattttaataaacgggggggggggggg
aaaatttttaaattttaaaaaagggggggggggggggaaaatttttaaat
tttaaaaaagggggggggggggggaaaatttttaaattttaaaaaagggg
gggggggggggaaaatttttaaattttaaaaaagggggggggggggggaa
aatttttaaattttaaaaaagggggggggggggggaaaatttttaaattt
taaaaaagggggggggggggggaaaatttttaaattttaaaaaagggggg
gggggggggaaaatttttaaattttaaaaaagggggggggggggggaaaa
tttttaaattttaaaaaagggggggggggggggaaaatttttaaatttta
aaaaagggggggggggggggaaaatttttaaattttaaaaaagggggggg
gggggggaaaatttttaaattttaaaaaagggggggggggggggaaaatt
tttaaattttaaaaaagggggggggggggggaaaatttttaaattttaaa
aaagggggggggggggggaaaatttttaaattttaaaaaagggggggggg
gggggaaaatttttaaattttaaaaaagggggggggggggggaaaatttt
taaattttaaaaaagggggggggggggggaaaatttttaaattttaaaaa
agggggggggggggggaaaatttttaaattttaaaaaagggggggggggg
gggaaaatttttaaattttaaaaaagggggggggggggggaaaattttta
aattttaaaaaagggggggggggggggaaaatttttaaattttaaaaaag
ggggggggggggggaaaatttttaaattttaaaaaagggggggggggggg
gaaaatttttaaattttaaaaaagggggggggggggggaaaatttttaaa
ttttaaaaaagggggggggggggggaaaatttttaaattttaaaaaaggg
ggggggggggggaaaatttttaaattttaaaaaaggggggggggggggga
aaatttttaaattttaaaaaagggggggggggggggaaaatttttaaatt
ttaaaaaagggggggggggggggaaaatttttaaattttaaaaaaggggg
ggggggggggaaaatttttaaattttaaaaaagggggggggggggggaaa
atttttaaattttaaaaaagggggggggggggggaaaatttttaaatttt
aaaaaagggggggggggggggaaaatttttaaattttaaaaaaggggggg
ggggggggaaaatttttaaattttaaaaaagggggggggggggggaaaat
ttttaaattttaaaaaagggggggggggggggaaaatttttaaattttaa
aaaagggggggggggggggaaaatttttaaattttaaaaaaggggggggg
ggggggaaaatttttaaattttaaaaaagggggggggggggggaaaattt
ttaaattttaaaaaagggggggggggggggaaaatttttaaattttaaaa
aagggggggggggggggaaaatttttaaattttaaaaaaggggggggggg
ggggaaaatttttaaattttaaaaaagggggggggggggggaaaattttt
aaattttaaaaaagggggggggggggggaaaatttttaaattttaaaaaa
gggggggggggggggaaaatttttaaattttaaaaaaggggggggggggg
ggaaaatttttaaattttaaaaaagggggggggggggggaaaatttttaa
attttaaaaaagggggggggggggggaaaatttttaaattttaaaaaagg
gggggggggggggaaaatttttaaattttaaaaaaggggggggggggggg
aaaatttttaaattttaaaaaagggggggggggggggaaaatttttaaat
tttaaaaaagggggggggggggggaaaatttttaaattttaaaaaagggg
gggggggggggaaaatttttaaattttaaaaaagggggggggggggggaa
aatttttaaattttaaaaaagggggggggggggggaaaatttttaaattt
taaaaaagggggggggggggggaaaatttttaaattttaaaaaagggggg
gggggggggaaaatttttaaattttaaaaaagggggggggggggggaaaa
tttttaaattttaaaaaagggggggggggggggaaaatttttaaatttta
aaaaagggggggggggggggaaaatttttaaattttaaaaaagggggggg
gggggggaaaatttttaaattttaaaaaagggggggggggggggaaaatt
tttaaattttaaaaaagggggggggggggggaaaatttttaaattttaaa
aaagggggggggggggggaaaatttttaaattttaaaaaagggggggggg
gggggaaaatttttaaattttaaaaaagggggggggggggggaaaatttt
taaattttaaaaaagggggggggggggggaaaatttttaaattttaaaaa
agggggggggggggggaaaatttttaaattttaaaaaagggggggggggg
gggaaaatttttaaattttaaaaaagggggggggggggggaaaattttta
aattttaaaaaagggggggggggggggaaaatttttaaattttaaaaaag
ggggggggggggggaaaatttttaaattttaaaaaagggggggggggggg
gaaaatttttaaattttaaaaaagggggggggggggggaaaatttttaaa
ttttaaaaaagggggggggggggggaattttccggggggttggaaattgt
acttttgaaaacccaaaaataaggtaaataaagGCTAATATCAGACTATT
TAGAGCAAcggctgaaaatattcttaagaatTAATAAACAGTggagtcct
aataaggtccggggggggtttatttggaacctaagagtacttgcATATTG
AAAACTCCTTAAACAAGGGAAAAGACTTTTACTTTCAATTTACATAATGA
CTCTACTACTTAGACTGTTACGCCAGTAAGGCTGAAATGTTATAAAGAAA
ATTTGTCGGTGGGAGGGGCTGAAACCTGTTAAGCAACAACCTCTCGTAAA
CTTTTGGTTGTTCTCCCAAACAGCTCCTATTTTAGCAAACCCTTCTTAAC
GTTCCCTCCCACTAACACGATCAATTAACCAATTAATTAACTGTTAGTAT
ATCTACCACCTACGAGCAAGTTTTCCTTGTTCGCATGTGACTCTCCCATA
AAGAAACAATAGGTTCTTGAAATTAGATTTACATTTTACACCAATAAAAA
GAGCGAAATggttttctactttttttttagGTTCAGTTTACGAAGGATTG
AAGGCAACCGCAGAACTAGAGTATGACGTCATGTTTATTATGAAGGGTGA
CAAATTCTACCCCGTGAAGGTTGGGGAGAAGTTCCCATGTCATTTCAAGT
TGATCCAAAACCCCGAGAAACGCCAGCGAAGTCTGTTGAACAATTTGTTG
ACCCCTCATCAAGTGAAAGCGAAAGGTGGAGAGGGGTGGGATGAAATGAT
TCTCTCGCCATCAAAAgtaatacaaaaatttgaaagtgtTGTACACAAGT
ACAtcaattctttgaaggaaaagaagaagaagttgATTGAAGAAGAGAAG
TTTGGTAAAGTAAAGAAGGGTGGAAAAGAACGAAATAACGAATGGCTGAT
GAAAGTTGATGATTACGTCATACGAAGGCATGGGCCAGCCATTCAGGTGG
ATATGATGAGGAAGGATGCTGATGGGAAGGAGAAGTTGTGGTATCAGGTG
GACCTGGTCCCTTGTTATGAACTTGTGAAGGGAAAAGAGAGTAAGTTCGA
ATtgtagaaagattcaaataatagaggCTCGAATAATCGAAAGTCGATTA
TAATTTCGTTAACCTCACGTTTTATGAAGTTGGAGGCAGCAATGTTTTTC
AGTATTTATCAAGTTTGGATCTGGTTCCTTGTTAATAAAGTTTTCAAAGT
TGTACCAAAGATATAATTATTGAACAATAACCAGCAGTTATGGgtttcat
tcgcgaaattaagtaatggaaatttggaaagacCTTATCCTCAAAATATT
TATAAacctcgcgaaaatttatcccattaaagtagcttAAATTACGTTAG
ATTACCTCGGACTCAATTCATACTTACTCTCGCGGTGGTTATGCTAGACT
TGAAATcaatatgttttttttaatacttAAACTTTTTTACCtgctttttt
gtattttcagaaCGGCTTTACGTCGCCAAACCTGCGAAAATCACAACGGA
AAAAGGAGATCGGAAATTTGTGCTGGAAAATTCATGGAGAATGTCTTTTT
CCCGTGAAGAGAAAGAAAAGTTAAATAAGATGGATAAAGACCAGGGCTGT
CGTCGCCAGGTCGTTCGTTTCTTGAAGGGAATGACCCAATCAGATCCAAC
CTTGAAAGGGATGACGTCATATTACTGGAAGAATGTGTTGTTCCATCTAA
CAGACAACGAAGAGGCGCGAAAATGGAGAAAAGAGGATTTTACGGAGCGT
GTTTTCGACATGATTTGGTATATGTCTCGTTTTGTTGAACATGGAATTTT
ACCGTTATATTTCAGTCCGACTTCTAATCTTTTTCAAGACATGGAAAAAA
AAACTGGCGACAGAATTCGACAACGCTTATCTTCTTTGTATTCGAAAGAG
AAGAAGTTTGGAAAGGTTTTCGAATCTATTTCCAAAAAGGCGGAGGAGGA
GTTGACAGTAGAAGAGAGTCAACCGCCATCAGAATCAACGGTCAAAGCGA
CCAACTCTGATacgcaaacaaagaaaaatcttaTTCTTGATATCAAAGAT
CTAGATGATGAAGATATGGATTTAAGAGGAGAAATTGATGCATTCGATGA
ACTAGATTTTGGAGACGAAGAAATTGATTCATTCGATTTTGGAGACTATG
ACGACTATGGGTACGAAGATTCGGACTCGTTTGATTCTGACCCATATGAT
GTCGATTTTTAATGACCCACTCAATTAGACGCGGTATTACGCGTTAGTTA
AAAACTAGGATTATGCAAGCTTTCTGAAGGAGCTTTCGGAACCTTCTAAA
GGGAGTTAGTCTTTAACCTCCAAAACACAGATGGAATGGCAATTGAGGTT
TACACGCACCTTAAGCGTTATGACATTTTATATGTAAAGACTtagggaca
cgagaagtttttttcgcgttggtgcaatgcattATGTAAAAATGCACTTT
AAGTGGAGAGTAAGTTGGAGAAAAGCAACATAAAAGAACAGATTTGATAA
ACCCAAACAACTATTTCAGTTGTATTTTAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00045975TCONS_00045975Clytia hemisphaericatranscript
TCONS_00045976TCONS_00045976Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00045975-proteinTCONS_00045975-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_105supercontigscaffold_105:111717..122297 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.63	2.4	5.65	6.79	5.4	4.64	7.75	7.74	5.58	9.7	8.29	4.07	9.01	8.24	7.53	13.23	3.88	4.69	12.14	15.16	5.49	5.51	6.51	7.61	10.85	10.28	4.98	5.21	3.8	4.57